Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
NUP88Q99567 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
NUP88Q99567 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
NUP88Q99567 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
NUP88Q99567 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
NUP88Q99567 MIR607-201ENST00000385241 96 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
NUP88Q99567 MTCO3P40-201ENST00000392516 676 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC4.37□□□□□ -1.71
NUP88Q99567 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC4.37□□□□□ -1.71
NUP88Q99567 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC4.37□□□□□ -1.71
NUP88Q99567 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
NUP88Q99567 DUTP6-201ENST00000425573 462 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 ISCA1P1-201ENST00000426679 387 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 RPL7L1P10-201ENST00000427790 463 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 GPR143P-201ENST00000434155 205 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 AC006480.1-201ENST00000449887 378 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.37□□□□□ -1.71
NUP88Q99567 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.37□□□□□ -1.71
NUP88Q99567 RNU2-58P-201ENST00000516403 183 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 NARSP2-201ENST00000518524 679 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 IGKV2D-19-201ENST00000523346 262 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 AP004242.1-201ENST00000533701 349 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
NUP88Q99567 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC4.37□□□□□ -1.71
NUP88Q99567 AC124947.2-202ENST00000552735 133 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 ZNF519P2-201ENST00000557032 169 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.37□□□□□ -1.71
NUP88Q99567 AC098848.2-201ENST00000588023 330 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 AP003465.2-201ENST00000602571 373 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 AC012468.1-201ENST00000604888 430 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 FRG1KP-201ENST00000623592 341 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 AL160394.1-201ENST00000624765 724 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 AL157786.1-207ENST00000627771 695 ntBASIC4.37□□□□□ -1.71
NUP88Q99567 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC4.37□□□□□ -1.71
NUP88Q99567 MAPK10-373ENST00000641983 6772 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
NUP88Q99567 AC012020.1-201ENST00000624541 1728 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
NUP88Q99567 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
NUP88Q99567 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
NUP88Q99567 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
NUP88Q99567 RNU5A-1-201ENST00000362698 116 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 RNU6-169P-201ENST00000365336 107 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 RNU6-76P-201ENST00000384060 104 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
NUP88Q99567 AL136372.1-201ENST00000403060 228 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.36□□□□□ -1.71
NUP88Q99567 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC4.36□□□□□ -1.71
NUP88Q99567 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.36□□□□□ -1.71
NUP88Q99567 MTND3P21-201ENST00000433774 331 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 HSPD1P21-201ENST00000436541 245 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 CYCSP43-201ENST00000438233 310 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.36□□□□□ -1.71
NUP88Q99567 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.36□□□□□ -1.71
NUP88Q99567 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.36□□□□□ -1.71
NUP88Q99567 SNRPGP6-201ENST00000451124 220 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 AC093899.1-201ENST00000457984 376 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 AC084198.1-201ENST00000477747 402 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC4.36□□□□□ -1.71
NUP88Q99567 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.36□□□□□ -1.71
NUP88Q99567 VWA8P1-201ENST00000510889 176 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.36□□□□□ -1.71
NUP88Q99567 RNU6-410P-201ENST00000517006 107 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.36□□□□□ -1.71
NUP88Q99567 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.36□□□□□ -1.71
NUP88Q99567 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC4.36□□□□□ -1.71
NUP88Q99567 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.36□□□□□ -1.71
NUP88Q99567 OR4H12P-201ENST00000556269 907 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC4.36□□□□□ -1.71
NUP88Q99567 AC090877.1-201ENST00000561418 344 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 AC006270.2-201ENST00000578523 652 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.36□□□□□ -1.71
NUP88Q99567 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.36□□□□□ -1.71
NUP88Q99567 AC012507.3-201ENST00000603556 477 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 SNHG22-203ENST00000617833 660 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 AC012314.7-201ENST00000619693 93 ntBASIC4.36□□□□□ -1.71
NUP88Q99567 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.36□□□□□ -1.71
NUP88Q99567 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.36□□□□□ -1.71
NUP88Q99567 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.36□□□□□ -1.71
NUP88Q99567 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
NUP88Q99567 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
NUP88Q99567 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
NUP88Q99567 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
NUP88Q99567 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.36□□□□□ -1.71
NUP88Q99567 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
NUP88Q99567 NCAPGP1-201ENST00000505112 1814 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
NUP88Q99567 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
NUP88Q99567 SNORD46.1-201ENST00000364139 104 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 RPL17P50-201ENST00000396131 546 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
NUP88Q99567 RPS29P4-201ENST00000414733 161 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 CRYBB2P1-203ENST00000415709 538 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.35□□□□□ -1.71
NUP88Q99567 AC008850.1-201ENST00000427546 362 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 MTATP6P4-201ENST00000427725 675 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 RPL23AP30-201ENST00000432419 501 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 AC016696.1-201ENST00000446949 318 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 175.1 ms