Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 RMST_9.1-201ENST00000619945 193 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AC116096.1-201ENST00000566804 2314 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 RNU6-534P-201ENST00000364877 106 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 Y_RNA.390-201ENST00000383932 102 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 RPS4XP8-201ENST00000402039 771 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 FGF7P8-201ENST00000402994 292 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 MIR1911-201ENST00000410783 80 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 DPPA3P1-201ENST00000448050 469 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 RPL36AP51-201ENST00000487216 318 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 RNU6-1220P-201ENST00000517126 108 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AC007458.1-201ENST00000542812 373 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AL121579.1-201ENST00000555129 305 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 HMGB1P6-201ENST00000569046 646 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AC105224.1-201ENST00000587055 421 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AP001429.1-201ENST00000602568 530 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AC093788.1-201ENST00000609356 927 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AL603758.1-201ENST00000618654 241 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 BDP1P-201ENST00000582658 1990 ntBASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
SMC1BQ8NDV3 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
SMC1BQ8NDV3 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SMC1BQ8NDV3 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SMC1BQ8NDV3 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 RNA5SP502-201ENST00000362694 119 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 RNU6-223P-201ENST00000362830 107 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 SNORD56.2-201ENST00000363242 71 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 RNU5E-8P-201ENST00000363502 116 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 UBA52P6-201ENST00000399822 382 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 MRPL50P2-201ENST00000416821 482 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AL121871.1-201ENST00000443413 436 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 MTND3P10-201ENST00000450967 341 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 RPL36AP13-201ENST00000457490 317 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AC068305.1-201ENST00000497406 726 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AC114797.1-201ENST00000514003 728 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 RNA5SP446-201ENST00000515955 82 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 RNU2-10P-201ENST00000516375 211 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 SCARNA24.1-201ENST00000516465 137 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AC104383.1-201ENST00000530297 370 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 YPEL5P3-201ENST00000547227 352 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AC008752.3-201ENST00000588113 712 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 RNA5SP108-201ENST00000605921 117 ntBASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
SMC1BQ8NDV3 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms