Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
USP53Q70EK8 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
USP53Q70EK8 Y_RNA.162-201ENST00000363683 102 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
USP53Q70EK8 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.53□□□□□ -1.68
USP53Q70EK8 RNU6-1074P-201ENST00000383995 104 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 RNA5SP219-201ENST00000390940 113 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 SNORA16.2-201ENST00000390991 127 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 RNU6-817P-201ENST00000391083 104 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 U3.35-201ENST00000408405 208 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 MIR548F5-201ENST00000408421 86 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.53□□□□□ -1.68
USP53Q70EK8 AC092809.3-201ENST00000415453 231 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 MTCO2P27-201ENST00000420740 428 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 AL353729.1-201ENST00000425044 720 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.53□□□□□ -1.68
USP53Q70EK8 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.53□□□□□ -1.68
USP53Q70EK8 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.53□□□□□ -1.68
USP53Q70EK8 RPL26P6-201ENST00000440913 438 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 AC107399.1-201ENST00000451226 265 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 AL591473.1-201ENST00000464297 313 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 RPL7AP28-201ENST00000464513 571 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 DYNLL1P5-201ENST00000467158 270 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 AP001086.1-201ENST00000494882 321 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.53□□□□□ -1.68
USP53Q70EK8 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.53□□□□□ -1.68
USP53Q70EK8 RNU6-566P-201ENST00000516790 107 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 AF186190.1-201ENST00000517470 480 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 AC135001.1-201ENST00000544546 283 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.53□□□□□ -1.68
USP53Q70EK8 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.53□□□□□ -1.68
USP53Q70EK8 MTCO3P23-201ENST00000561363 289 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 MIR3939-201ENST00000582614 106 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 MIR3672-201ENST00000584290 82 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC4.53□□□□□ -1.68
USP53Q70EK8 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.53□□□□□ -1.68
USP53Q70EK8 AL158032.1-201ENST00000605401 106 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 U2.17-201ENST00000611454 95 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 AC023043.4-201ENST00000612081 449 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 DUSP12P1-201ENST00000612874 516 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.53□□□□□ -1.68
USP53Q70EK8 AC131238.1-201ENST00000617135 328 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.53□□□□□ -1.68
USP53Q70EK8 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.53□□□□□ -1.68
USP53Q70EK8 MTND5P42-201ENST00000637720 498 ntBASIC4.53□□□□□ -1.68
USP53Q70EK8 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
USP53Q70EK8 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.53□□□□□ -1.68
USP53Q70EK8 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.53□□□□□ -1.68
USP53Q70EK8 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.53□□□□□ -1.68
USP53Q70EK8 AL356489.2-201ENST00000566968 3528 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
USP53Q70EK8 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
USP53Q70EK8 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
USP53Q70EK8 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
USP53Q70EK8 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC4.52□□□□□ -1.69
USP53Q70EK8 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
USP53Q70EK8 RNU6-1252P-201ENST00000363054 104 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 SNORA36C-201ENST00000384289 132 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 SNORD116-29-201ENST00000384516 83 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 SNORD70.1-201ENST00000391007 85 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
USP53Q70EK8 RN7SKP158-201ENST00000410453 326 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 RNU4-14P-201ENST00000410858 122 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 RNA5SP111-201ENST00000411386 101 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 AC074085.1-201ENST00000413598 418 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.52□□□□□ -1.69
USP53Q70EK8 AC244098.2-201ENST00000422068 99 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 AL591704.1-201ENST00000432574 275 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.52□□□□□ -1.69
USP53Q70EK8 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.52□□□□□ -1.69
USP53Q70EK8 RPL23AP2-201ENST00000471227 466 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 AC020890.1-201ENST00000491837 504 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 RNU6-273P-201ENST00000516937 96 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 Y_RNA.718-201ENST00000517110 102 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.52□□□□□ -1.69
USP53Q70EK8 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.52□□□□□ -1.69
USP53Q70EK8 AC007224.1-201ENST00000564410 144 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 AC084783.1-201ENST00000565846 910 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 MTCO3P13-201ENST00000577757 781 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 SNORD84-203ENST00000584275 78 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.52□□□□□ -1.69
USP53Q70EK8 RNF138P2-201ENST00000603490 592 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 AP001330.4-201ENST00000604350 154 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.52□□□□□ -1.69
USP53Q70EK8 AC090971.5-201ENST00000621102 293 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 AL445363.3-201ENST00000623080 671 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
USP53Q70EK8 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
USP53Q70EK8 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC4.52□□□□□ -1.69
USP53Q70EK8 OR14L1P-202ENST00000641545 3009 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.52□□□□□ -1.69
USP53Q70EK8 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
USP53Q70EK8 ZNF137P-201ENST00000456718 1920 ntBASIC4.52□□□□□ -1.69
USP53Q70EK8 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.52□□□□□ -1.69
USP53Q70EK8 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.52□□□□□ -1.69
USP53Q70EK8 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
USP53Q70EK8 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
USP53Q70EK8 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.52□□□□□ -1.69
USP53Q70EK8 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
USP53Q70EK8 LINC01109-201ENST00000603837 3081 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms