Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.23□□□□□ -2.21
USF3Q68DE3 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.23□□□□□ -2.21
USF3Q68DE3 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.23□□□□□ -2.21
USF3Q68DE3 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC1.23□□□□□ -2.21
USF3Q68DE3 AL034374.1-201ENST00000406329 351 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 MIR1304-201ENST00000408243 91 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 POLHP1-201ENST00000411806 470 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 RPL26P37-201ENST00000411983 438 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 AC092447.6-201ENST00000414578 210 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 AC241520.1-201ENST00000422654 1099 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 AL121871.1-201ENST00000443413 436 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 COX6CP12-201ENST00000446748 202 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 AC017099.1-201ENST00000448261 1028 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 AC087808.1-201ENST00000520501 361 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 AC008015.1-201ENST00000555505 465 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.23□□□□□ -2.21
USF3Q68DE3 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC1.23□□□□□ -2.21
USF3Q68DE3 MIR7974-201ENST00000615835 79 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 U73479.1-201ENST00000618062 168 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC1.23□□□□□ -2.21
USF3Q68DE3 MTND5P3-201ENST00000438536 1800 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
USF3Q68DE3 AL136520.1-201ENST00000600311 1322 ntBASIC1.22□□□□□ -2.21
USF3Q68DE3 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.22□□□□□ -2.21
USF3Q68DE3 MIR153-1-201ENST00000384914 90 ntBASIC1.22□□□□□ -2.21
USF3Q68DE3 MIR320A-201ENST00000385302 82 ntBASIC1.22□□□□□ -2.21
USF3Q68DE3 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.22□□□□□ -2.21
USF3Q68DE3 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC1.22□□□□□ -2.21
USF3Q68DE3 BZW1P2-201ENST00000473537 826 ntBASIC1.22□□□□□ -2.21
USF3Q68DE3 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC1.22□□□□□ -2.21
USF3Q68DE3 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.22□□□□□ -2.21
USF3Q68DE3 AL163153.1-201ENST00000554223 283 ntBASIC1.22□□□□□ -2.21
USF3Q68DE3 AC136443.5-201ENST00000603741 370 ntBASIC1.22□□□□□ -2.21
USF3Q68DE3 AL078603.1-201ENST00000603824 313 ntBASIC1.22□□□□□ -2.21
USF3Q68DE3 OR10AB1P-201ENST00000609613 938 ntBASIC1.22□□□□□ -2.21
USF3Q68DE3 Y_RNA.36-201ENST00000362602 112 ntBASIC1.21□□□□□ -2.21
USF3Q68DE3 HNRNPDP2-201ENST00000406475 478 ntBASIC1.21□□□□□ -2.21
USF3Q68DE3 RPS15AP17-201ENST00000470598 390 ntBASIC1.21□□□□□ -2.21
USF3Q68DE3 MTCO3P35-201ENST00000485582 781 ntBASIC1.21□□□□□ -2.21
USF3Q68DE3 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC1.21□□□□□ -2.21
USF3Q68DE3 AL137100.2-201ENST00000555786 315 ntBASIC1.21□□□□□ -2.21
USF3Q68DE3 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.21□□□□□ -2.21
USF3Q68DE3 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.21□□□□□ -2.21
USF3Q68DE3 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.21□□□□□ -2.21
USF3Q68DE3 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.21□□□□□ -2.22
USF3Q68DE3 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
USF3Q68DE3 MTND3P6-201ENST00000485242 339 ntBASIC1.21□□□□□ -2.22
USF3Q68DE3 MRPL42P6-201ENST00000486397 371 ntBASIC1.21□□□□□ -2.22
USF3Q68DE3 MTCYBP18-201ENST00000501056 747 ntBASIC1.21□□□□□ -2.22
USF3Q68DE3 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC1.21□□□□□ -2.22
USF3Q68DE3 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC1.21□□□□□ -2.22
USF3Q68DE3 AC087373.1-201ENST00000524920 491 ntBASIC1.21□□□□□ -2.22
USF3Q68DE3 OR4R1P-201ENST00000529879 463 ntBASIC1.21□□□□□ -2.22
USF3Q68DE3 AL731537.2-201ENST00000561565 951 ntBASIC1.21□□□□□ -2.22
USF3Q68DE3 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
USF3Q68DE3 AL356118.1-201ENST00000635272 1078 ntBASIC1.21□□□□□ -2.22
USF3Q68DE3 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
USF3Q68DE3 AC008568.2-201ENST00000623862 2313 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
USF3Q68DE3 RNU6-342P-201ENST00000384521 104 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 MIR607-201ENST00000385241 96 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.2□□□□□ -2.22
USF3Q68DE3 AC244098.2-201ENST00000422068 99 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC1.2□□□□□ -2.22
USF3Q68DE3 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC1.2□□□□□ -2.22
USF3Q68DE3 SNORD121B-201ENST00000458838 81 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC1.2□□□□□ -2.22
USF3Q68DE3 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.2□□□□□ -2.22
USF3Q68DE3 AC090821.2-201ENST00000523552 176 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 SYF2P1-201ENST00000550658 413 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC1.2□□□□□ -2.22
USF3Q68DE3 AC245128.3-201ENST00000594721 748 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 AC008962.1-201ENST00000605729 304 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 MIR6767-201ENST00000637302 66 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.2□□□□□ -2.22
USF3Q68DE3 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.2□□□□□ -2.22
USF3Q68DE3 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC1.2□□□□□ -2.22
USF3Q68DE3 AC007256.1-201ENST00000392253 2765 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
USF3Q68DE3 SNORA51.2-201ENST00000364595 132 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC1.2□□□□□ -2.22
USF3Q68DE3 CALM1P2-201ENST00000452941 448 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 RPS29P29-201ENST00000456396 171 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 RPL21P103-201ENST00000479921 488 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
USF3Q68DE3 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC1.2□□□□□ -2.22
USF3Q68DE3 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC1.2□□□□□ -2.22
USF3Q68DE3 SNORA31.23-201ENST00000517219 133 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 AP001804.3-201ENST00000525146 880 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 RN7SL622P-201ENST00000585292 275 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 AC098657.3-201ENST00000620434 263 ntBASIC1.2□□□□□ -2.22
USF3Q68DE3 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.2□□□□□ -2.22
USF3Q68DE3 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
USF3Q68DE3 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC1.2□□□□□ -2.22
USF3Q68DE3 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
USF3Q68DE3 OR4G11P-202ENST00000642116 1414 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 RNU6-50P-201ENST00000362356 103 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 Z85995.1-201ENST00000415547 335 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 CKS1BP5-201ENST00000434172 273 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms