Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RNU2-71P-201ENST00000411395 189 ntBASIC3.92□□□□□ -1.78
CIITAP33076 BX295541.1-201ENST00000417774 250 ntBASIC3.92□□□□□ -1.78
CIITAP33076 AL159169.1-201ENST00000421119 127 ntBASIC3.92□□□□□ -1.78
CIITAP33076 USP9YP36-201ENST00000424581 829 ntBASIC3.92□□□□□ -1.78
CIITAP33076 YME1L1P1-201ENST00000429435 297 ntBASIC3.92□□□□□ -1.78
CIITAP33076 SDCBPP1-201ENST00000440192 890 ntBASIC3.92□□□□□ -1.78
CIITAP33076 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CIITAP33076 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.92□□□□□ -1.78
CIITAP33076 FGF7P6-202ENST00000451282 293 ntBASIC3.92□□□□□ -1.78
CIITAP33076 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.92□□□□□ -1.78
CIITAP33076 AC008155.2-201ENST00000464337 397 ntBASIC3.92□□□□□ -1.78
CIITAP33076 AC087312.1-201ENST00000471411 480 ntBASIC3.92□□□□□ -1.78
CIITAP33076 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.92□□□□□ -1.78
CIITAP33076 AC108078.1-201ENST00000508073 725 ntBASIC3.92□□□□□ -1.78
CIITAP33076 TXNP6-201ENST00000510190 310 ntBASIC3.92□□□□□ -1.78
CIITAP33076 RNU6-201P-201ENST00000517100 61 ntBASIC3.92□□□□□ -1.78
CIITAP33076 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3.92□□□□□ -1.78
CIITAP33076 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.92□□□□□ -1.78
CIITAP33076 AC024224.1-201ENST00000538284 609 ntBASIC3.92□□□□□ -1.78
CIITAP33076 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.92□□□□□ -1.78
CIITAP33076 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.92□□□□□ -1.78
CIITAP33076 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.92□□□□□ -1.78
CIITAP33076 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.92□□□□□ -1.78
CIITAP33076 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.92□□□□□ -1.78
CIITAP33076 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.92□□□□□ -1.78
CIITAP33076 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.92□□□□□ -1.78
CIITAP33076 CKS1BP3-201ENST00000600888 237 ntBASIC3.92□□□□□ -1.78
CIITAP33076 AL365503.1-201ENST00000605247 905 ntBASIC3.92□□□□□ -1.78
CIITAP33076 AC103710.1-201ENST00000610003 901 ntBASIC3.92□□□□□ -1.78
CIITAP33076 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.92□□□□□ -1.78
CIITAP33076 U4.5-201ENST00000617137 123 ntBASIC3.92□□□□□ -1.78
CIITAP33076 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.92□□□□□ -1.78
CIITAP33076 AC068880.5-201ENST00000624331 290 ntBASIC3.92□□□□□ -1.78
CIITAP33076 AC124864.2-201ENST00000624736 186 ntBASIC3.92□□□□□ -1.78
CIITAP33076 PISRT1-201ENST00000626175 531 ntBASIC3.92□□□□□ -1.78
CIITAP33076 AL157786.1-207ENST00000627771 695 ntBASIC3.92□□□□□ -1.78
CIITAP33076 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
CIITAP33076 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
CIITAP33076 MTND5P33-201ENST00000571250 1450 ntBASIC3.92□□□□□ -1.78
CIITAP33076 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.92□□□□□ -1.78
CIITAP33076 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
CIITAP33076 PRO1804-201ENST00000623780 2050 ntBASIC3.91□□□□□ -1.78
CIITAP33076 OR5J1P-201ENST00000313544 939 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AL161781.1-201ENST00000354277 403 ntBASIC3.91□□□□□ -1.78
CIITAP33076 RNA5SP258-201ENST00000362750 119 ntBASIC3.91□□□□□ -1.78
CIITAP33076 RNU6-263P-201ENST00000363811 107 ntBASIC3.91□□□□□ -1.78
CIITAP33076 RNU1-33P-201ENST00000364249 162 ntBASIC3.91□□□□□ -1.78
CIITAP33076 Y_RNA.234-201ENST00000364409 97 ntBASIC3.91□□□□□ -1.78
CIITAP33076 RNY4P34-201ENST00000364779 95 ntBASIC3.91□□□□□ -1.78
CIITAP33076 SNORD6-201ENST00000365444 73 ntBASIC3.91□□□□□ -1.78
CIITAP33076 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CIITAP33076 HSPE1P26-201ENST00000405341 275 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AC002075.2-201ENST00000425207 252 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AC097713.2-201ENST00000430199 356 ntBASIC3.91□□□□□ -1.78
CIITAP33076 MRPS10P2-201ENST00000431226 381 ntBASIC3.91□□□□□ -1.78
CIITAP33076 MTND3P21-201ENST00000433774 331 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.91□□□□□ -1.78
CIITAP33076 AC073614.1-201ENST00000438690 650 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AL357552.1-201ENST00000445254 415 ntBASIC3.91□□□□□ -1.78
CIITAP33076 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.91□□□□□ -1.78
CIITAP33076 AC079448.1-201ENST00000449377 373 ntBASIC3.91□□□□□ -1.78
CIITAP33076 RPS24P6-201ENST00000452670 400 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.91□□□□□ -1.78
CIITAP33076 RPL23AP62-201ENST00000463396 453 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.91□□□□□ -1.78
CIITAP33076 AC034222.1-201ENST00000494052 532 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AC093663.1-201ENST00000497190 394 ntBASIC3.91□□□□□ -1.78
CIITAP33076 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.91□□□□□ -1.78
CIITAP33076 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.91□□□□□ -1.78
CIITAP33076 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.91□□□□□ -1.78
CIITAP33076 DEFB108A-201ENST00000530110 222 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AC123904.2-201ENST00000548059 300 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AL121603.1-201ENST00000553815 142 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.91□□□□□ -1.78
CIITAP33076 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.91□□□□□ -1.78
CIITAP33076 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.91□□□□□ -1.78
CIITAP33076 AC055876.5-201ENST00000605667 259 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AL355472.4-201ENST00000610233 626 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AC012531.5-201ENST00000611375 151 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AL355365.1-201ENST00000616480 294 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.91□□□□□ -1.78
CIITAP33076 AC012150.2-201ENST00000621300 544 ntBASIC3.91□□□□□ -1.78
CIITAP33076 AC093908.1-201ENST00000623125 8092 ntBASIC3.91□□□□□ -1.78
CIITAP33076 FARSBP1-201ENST00000435808 1778 ntBASIC3.91□□□□□ -1.78
CIITAP33076 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CIITAP33076 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.91□□□□□ -1.78
CIITAP33076 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CIITAP33076 AL645937.1-201ENST00000641739 1652 ntBASIC3.9□□□□□ -1.78
CIITAP33076 AC032011.1-201ENST00000611703 1549 ntBASIC3.9□□□□□ -1.78
CIITAP33076 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.78
CIITAP33076 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.9□□□□□ -1.78
CIITAP33076 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.9□□□□□ -1.78
CIITAP33076 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CIITAP33076 RNU6-1249P-201ENST00000363237 111 ntBASIC3.9□□□□□ -1.79
CIITAP33076 RNA5SP50-201ENST00000363731 107 ntBASIC3.9□□□□□ -1.79
CIITAP33076 Y_RNA.248-201ENST00000364501 109 ntBASIC3.9□□□□□ -1.79
CIITAP33076 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.9□□□□□ -1.79
CIITAP33076 AL356421.1-201ENST00000403255 413 ntBASIC3.9□□□□□ -1.79
CIITAP33076 AL078595.1-201ENST00000404458 226 ntBASIC3.9□□□□□ -1.79
CIITAP33076 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms