Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RPS3AP26-201ENST00000398259 784 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
HOXC9P31274 AC092447.6-201ENST00000414578 210 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 SEPT2P1-201ENST00000419651 180 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 AL139413.1-201ENST00000421309 217 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXC9P31274 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXC9P31274 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXC9P31274 AP000936.2-201ENST00000447151 681 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXC9P31274 AC009961.3-201ENST00000449832 765 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 OR6K1P-201ENST00000456766 971 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 AC104563.1-201ENST00000476147 376 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 AC114781.4-201ENST00000513707 639 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 AC068587.4-201ENST00000533893 186 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 AC092851.1-201ENST00000535964 478 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 CBX3P5-201ENST00000552017 521 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.75□□□□□ -1.81
HOXC9P31274 AC090615.1-201ENST00000577519 154 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXC9P31274 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXC9P31274 AC245008.1-201ENST00000608123 476 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC9P31274 AC243829.7-201ENST00000633081 225 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
HOXC9P31274 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXC9P31274 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC9P31274 AC095050.2-201ENST00000510748 1458 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXC9P31274 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXC9P31274 RNU5F-6P-201ENST00000362979 116 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 XGY1-201ENST00000381172 446 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 SNORD51-201ENST00000384320 80 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 RN7SKP266-201ENST00000410232 287 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 RNA5SP21-201ENST00000410917 96 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 MTCO1P17-201ENST00000411522 491 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXC9P31274 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXC9P31274 AC244035.1-201ENST00000430042 390 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 ARL5AP4-201ENST00000430731 512 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXC9P31274 AC098826.1-201ENST00000433943 471 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXC9P31274 HMGN2P21-201ENST00000447764 270 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 AL445669.2-201ENST00000454425 421 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
HOXC9P31274 AC078817.1-201ENST00000492623 435 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 COX7A2P2-201ENST00000505291 250 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXC9P31274 AC116347.2-201ENST00000514912 523 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 RNA5SP309-201ENST00000516670 106 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXC9P31274 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXC9P31274 FAM60DP-201ENST00000524174 632 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXC9P31274 HIGD1AP10-201ENST00000527837 282 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXC9P31274 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXC9P31274 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXC9P31274 AC135507.1-201ENST00000607214 561 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 AC009090.3-201ENST00000616553 565 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.74□□□□□ -1.81
HOXC9P31274 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXC9P31274 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXC9P31274 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXC9P31274 AL161781.1-201ENST00000354277 403 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 RNU6-859P-201ENST00000362728 107 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 Y_RNA.97-201ENST00000363094 102 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 RNU6-1249P-201ENST00000363237 111 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 RNU6-853P-201ENST00000364306 107 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 Y_RNA.234-201ENST00000364409 97 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXC9P31274 RNU6-837P-201ENST00000391056 108 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 AL356421.1-201ENST00000403255 413 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 Z98941.1-201ENST00000407764 100 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXC9P31274 AC245054.2-201ENST00000415639 319 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 AC016907.1-201ENST00000419483 435 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 AL445669.1-201ENST00000426743 755 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 OR2AS1P-201ENST00000427827 319 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXC9P31274 MTCO2P16-201ENST00000436962 677 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 RSU1P2-202ENST00000437884 485 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 AP000542.1-201ENST00000448473 371 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 snoU13.8-201ENST00000458890 104 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 snoU13.3-201ENST00000459441 104 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXC9P31274 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXC9P31274 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXC9P31274 AC117522.3-201ENST00000507974 584 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 AF131216.2-201ENST00000512316 564 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 AC091965.2-201ENST00000512324 613 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXC9P31274 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXC9P31274 AC006270.2-201ENST00000578523 652 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 AC022146.1-201ENST00000595307 847 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 AC004853.1-201ENST00000604902 698 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
HOXC9P31274 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.73□□□□□ -1.81
HOXC9P31274 CRYM-AS1-204ENST00000637983 556 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 144.8 ms