Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RPS3AP23-202ENST00000574601 686 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 MIR4429-201ENST00000580105 73 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 AC005261.5-201ENST00000596280 355 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD3P31249 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD3P31249 AL603758.1-201ENST00000618654 241 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 AL136221.1-201ENST00000621449 509 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.33□□□□□ -1.88
HOXD3P31249 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD3P31249 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HOXD3P31249 LARP1BP1-201ENST00000506036 1359 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 MTND4P35-201ENST00000604257 1375 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD3P31249 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD3P31249 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD3P31249 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD3P31249 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.33□□□□□ -1.88
HOXD3P31249 BDP1P-201ENST00000582658 1990 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.32□□□□□ -1.88
HOXD3P31249 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD3P31249 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD3P31249 AC073343.1-201ENST00000328239 651 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 RNU6-552P-201ENST00000362869 119 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 Y_RNA.72-201ENST00000362894 103 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 RNU4-73P-201ENST00000363164 141 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 Y_RNA.157-201ENST00000363638 102 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 RN7SKP280-201ENST00000364196 304 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 RNU6-701P-201ENST00000384059 107 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD3P31249 RNU6-373P-201ENST00000411247 98 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD3P31249 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD3P31249 AL137014.1-201ENST00000420490 1226 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD3P31249 SRIP2-201ENST00000428470 166 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 AC090774.1-201ENST00000435925 246 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD3P31249 HSFY6P-201ENST00000445573 403 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD3P31249 AC008481.1-201ENST00000463278 396 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD3P31249 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD3P31249 VN1R105P-201ENST00000486595 910 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 AC093278.1-201ENST00000494700 600 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD3P31249 AC026801.2-201ENST00000515352 425 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD3P31249 RNU6-1038P-201ENST00000516516 104 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 RNU1-45P-201ENST00000517191 141 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 BTF3P12-201ENST00000519620 469 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 HMGN1P28-201ENST00000521340 364 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD3P31249 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD3P31249 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD3P31249 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD3P31249 RPL21P7-201ENST00000557463 483 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXD3P31249 RPL23AP97-201ENST00000568955 471 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 AF038458.1-201ENST00000588406 262 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 AC012443.1-201ENST00000605605 231 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 RNU6-89P-201ENST00000606519 100 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 AC079684.1-201ENST00000621405 437 ntBASIC3.32□□□□□ -1.88
HOXD3P31249 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD3P31249 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD3P31249 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD3P31249 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD3P31249 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD3P31249 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
HOXD3P31249 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.32□□□□□ -1.88
HOXD3P31249 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD3P31249 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD3P31249 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
HOXD3P31249 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
HOXD3P31249 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD3P31249 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 MARK2P15-201ENST00000432204 2186 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
HOXD3P31249 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
HOXD3P31249 TAB3P1-202ENST00000452645 1634 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HOXD3P31249 RNU6-960P-201ENST00000364056 120 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 SNORA62.3-201ENST00000365110 153 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 SNORA23-201ENST00000365128 182 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 RNU4-66P-201ENST00000365199 138 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 RNA5SP22-201ENST00000365393 109 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 RNU6-61P-201ENST00000365528 109 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 SMIM11P1-201ENST00000369586 178 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 RNU6-38P-201ENST00000384085 107 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 Y_RNA.509-201ENST00000384506 99 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 MIR554-201ENST00000384874 96 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 441.8 ms