Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC091021.1-201ENST00000468051 388 ntBASIC5.16□□□□□ -1.58
MSX1P28360 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.16□□□□□ -1.58
MSX1P28360 RN7SL184P-201ENST00000488308 297 ntBASIC5.16□□□□□ -1.58
MSX1P28360 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.16□□□□□ -1.58
MSX1P28360 Y_RNA.662-201ENST00000516028 97 ntBASIC5.16□□□□□ -1.58
MSX1P28360 IGHVII-62-1-201ENST00000519283 235 ntBASIC5.16□□□□□ -1.58
MSX1P28360 AP006245.2-201ENST00000522004 300 ntBASIC5.16□□□□□ -1.58
MSX1P28360 AC137627.1-201ENST00000545761 289 ntBASIC5.16□□□□□ -1.58
MSX1P28360 TRAV37-201ENST00000553906 342 ntBASIC5.16□□□□□ -1.58
MSX1P28360 AC044860.2-201ENST00000561005 179 ntBASIC5.16□□□□□ -1.58
MSX1P28360 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.16□□□□□ -1.58
MSX1P28360 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.16□□□□□ -1.58
MSX1P28360 AC240442.1-201ENST00000616055 283 ntBASIC5.16□□□□□ -1.58
MSX1P28360 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.16□□□□□ -1.58
MSX1P28360 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX1P28360 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.16□□□□□ -1.58
MSX1P28360 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.16□□□□□ -1.58
MSX1P28360 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX1P28360 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX1P28360 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.16□□□□□ -1.58
MSX1P28360 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.16□□□□□ -1.58
MSX1P28360 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.16□□□□□ -1.58
MSX1P28360 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.16□□□□□ -1.58
MSX1P28360 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.16□□□□□ -1.58
MSX1P28360 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
MSX1P28360 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
MSX1P28360 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
MSX1P28360 GVINP1-202ENST00000531871 7271 ntBASIC5.15□□□□□ -1.58
MSX1P28360 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
MSX1P28360 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.15□□□□□ -1.58
MSX1P28360 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.15□□□□□ -1.58
MSX1P28360 Y_RNA.44-201ENST00000362676 108 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-37P-201ENST00000362692 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 Y_RNA.81-201ENST00000362997 102 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-11P-201ENST00000364234 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-7-201ENST00000364784 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNA5SP131-201ENST00000365452 119 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-8-201ENST00000365467 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.15□□□□□ -1.59
MSX1P28360 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-47P-201ENST00000383866 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-25P-201ENST00000383873 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-1-201ENST00000383898 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-36P-201ENST00000384172 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-4P-201ENST00000384205 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-5P-201ENST00000384238 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-3P-201ENST00000384314 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-16P-201ENST00000384385 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-102P-201ENST00000384485 104 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-15P-201ENST00000384534 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-2-201ENST00000384627 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-29P-201ENST00000384637 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-9-201ENST00000384776 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
MSX1P28360 SNORA12.2-201ENST00000391040 156 ntBASIC5.15□□□□□ -1.59
MSX1P28360 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.15□□□□□ -1.59
MSX1P28360 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC5.15□□□□□ -1.59
MSX1P28360 RPL7AP73-201ENST00000413490 353 ntBASIC5.15□□□□□ -1.59
MSX1P28360 AL133482.1-201ENST00000415988 498 ntBASIC5.15□□□□□ -1.59
MSX1P28360 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC5.15□□□□□ -1.59
MSX1P28360 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.15□□□□□ -1.59
MSX1P28360 AC008065.1-201ENST00000428525 348 ntBASIC5.15□□□□□ -1.59
MSX1P28360 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.15□□□□□ -1.59
MSX1P28360 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC5.15□□□□□ -1.59
MSX1P28360 AL592045.1-201ENST00000429867 352 ntBASIC5.15□□□□□ -1.59
MSX1P28360 CFL1P1-202ENST00000432948 411 ntBASIC5.15□□□□□ -1.59
MSX1P28360 IGHV5-78-201ENST00000450948 295 ntBASIC5.15□□□□□ -1.59
MSX1P28360 AC079354.2-201ENST00000453523 154 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RPS18P6-201ENST00000476880 458 ntBASIC5.15□□□□□ -1.59
MSX1P28360 RPL7P47-201ENST00000497299 556 ntBASIC5.15□□□□□ -1.59
MSX1P28360 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC5.15□□□□□ -1.59
MSX1P28360 APOOP4-201ENST00000513530 597 ntBASIC5.15□□□□□ -1.59
MSX1P28360 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.15□□□□□ -1.59
MSX1P28360 AC022559.1-201ENST00000520905 205 ntBASIC5.15□□□□□ -1.59
MSX1P28360 AP000859.1-201ENST00000525536 307 ntBASIC5.15□□□□□ -1.59
MSX1P28360 AC104581.2-201ENST00000572227 430 ntBASIC5.15□□□□□ -1.59
MSX1P28360 MIR1273C-201ENST00000578669 77 ntBASIC5.15□□□□□ -1.59
MSX1P28360 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.15□□□□□ -1.59
MSX1P28360 MIR1269B-201ENST00000580405 75 ntBASIC5.15□□□□□ -1.59
MSX1P28360 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.15□□□□□ -1.59
MSX1P28360 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.15□□□□□ -1.59
MSX1P28360 RNU6-6P-201ENST00000606623 107 ntBASIC5.15□□□□□ -1.59
MSX1P28360 AC034102.8-201ENST00000615146 484 ntBASIC5.15□□□□□ -1.59
MSX1P28360 AC097372.5-201ENST00000623665 376 ntBASIC5.15□□□□□ -1.59
MSX1P28360 Z99571.1-201ENST00000636677 394 ntBASIC5.15□□□□□ -1.59
MSX1P28360 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSX1P28360 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.59
MSX1P28360 OR4F13P-202ENST00000560066 2054 ntBASIC5.15□□□□□ -1.59
MSX1P28360 PABPC1P6-201ENST00000445594 1829 ntBASIC5.15□□□□□ -1.59
MSX1P28360 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.15□□□□□ -1.59
MSX1P28360 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
MSX1P28360 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
MSX1P28360 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
MSX1P28360 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSX1P28360 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.15□□□□□ -1.59
MSX1P28360 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSX1P28360 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.59
MSX1P28360 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.15□□□□□ -1.59
MSX1P28360 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
MSX1P28360 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms