Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CFAP54Q96N23 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.76■□□□□ 0.59
CFAP54Q96N23 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CFAP54Q96N23 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CFAP54Q96N23 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CFAP54Q96N23 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CFAP54Q96N23 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CFAP54Q96N23 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.76■□□□□ 0.59
CFAP54Q96N23 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CFAP54Q96N23 FAM197Y8-203ENST00000450145 560 ntBASIC18.76■□□□□ 0.59
CFAP54Q96N23 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.76■□□□□ 0.59
CFAP54Q96N23 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.76■□□□□ 0.59
CFAP54Q96N23 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
CFAP54Q96N23 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CFAP54Q96N23 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CFAP54Q96N23 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CFAP54Q96N23 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CFAP54Q96N23 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CFAP54Q96N23 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.75■□□□□ 0.59
CFAP54Q96N23 AC009065.1-201ENST00000564055 1225 ntBASIC18.75■□□□□ 0.59
CFAP54Q96N23 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
CFAP54Q96N23 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CFAP54Q96N23 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CFAP54Q96N23 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CFAP54Q96N23 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.75■□□□□ 0.59
CFAP54Q96N23 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.75■□□□□ 0.59
CFAP54Q96N23 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CFAP54Q96N23 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
CFAP54Q96N23 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CFAP54Q96N23 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.75■□□□□ 0.59
CFAP54Q96N23 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.75■□□□□ 0.59
CFAP54Q96N23 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CFAP54Q96N23 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CFAP54Q96N23 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CFAP54Q96N23 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.75■□□□□ 0.59
CFAP54Q96N23 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CFAP54Q96N23 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CFAP54Q96N23 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.75■□□□□ 0.59
CFAP54Q96N23 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
CFAP54Q96N23 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CFAP54Q96N23 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CFAP54Q96N23 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CFAP54Q96N23 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.74■□□□□ 0.59
CFAP54Q96N23 FP700111.2-201ENST00000619190 1892 ntBASIC18.74■□□□□ 0.59
CFAP54Q96N23 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.74■□□□□ 0.59
CFAP54Q96N23 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.74■□□□□ 0.59
CFAP54Q96N23 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.74■□□□□ 0.59
CFAP54Q96N23 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CFAP54Q96N23 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CFAP54Q96N23 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.74■□□□□ 0.59
CFAP54Q96N23 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.74■□□□□ 0.59
CFAP54Q96N23 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.74■□□□□ 0.59
CFAP54Q96N23 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CFAP54Q96N23 SMG8-203ENST00000578922 2178 ntBASIC18.74■□□□□ 0.59
CFAP54Q96N23 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CFAP54Q96N23 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CFAP54Q96N23 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CFAP54Q96N23 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CFAP54Q96N23 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CFAP54Q96N23 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CFAP54Q96N23 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CFAP54Q96N23 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CFAP54Q96N23 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CFAP54Q96N23 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CFAP54Q96N23 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
CFAP54Q96N23 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CFAP54Q96N23 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CFAP54Q96N23 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CFAP54Q96N23 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.73■□□□□ 0.59
CFAP54Q96N23 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.73■□□□□ 0.59
CFAP54Q96N23 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CFAP54Q96N23 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CFAP54Q96N23 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CFAP54Q96N23 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.73■□□□□ 0.59
CFAP54Q96N23 KRT8P41-201ENST00000533985 1514 ntBASIC18.73■□□□□ 0.59
CFAP54Q96N23 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CFAP54Q96N23 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CFAP54Q96N23 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CFAP54Q96N23 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CFAP54Q96N23 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CFAP54Q96N23 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.73■□□□□ 0.59
CFAP54Q96N23 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CFAP54Q96N23 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CFAP54Q96N23 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CFAP54Q96N23 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CFAP54Q96N23 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CFAP54Q96N23 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CFAP54Q96N23 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CFAP54Q96N23 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.72■□□□□ 0.59
CFAP54Q96N23 AC244015.2-201ENST00000616358 1861 ntBASIC18.72■□□□□ 0.59
CFAP54Q96N23 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.72■□□□□ 0.59
CFAP54Q96N23 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CFAP54Q96N23 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CFAP54Q96N23 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CFAP54Q96N23 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.72■□□□□ 0.59
CFAP54Q96N23 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CFAP54Q96N23 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CFAP54Q96N23 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.72■□□□□ 0.59
CFAP54Q96N23 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.72■□□□□ 0.59
CFAP54Q96N23 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms