Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 HBZP1-201ENST00000354915 429 ntBASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 AC024243.1-201ENST00000609234 778 ntBASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
USHBP1Q8N6Y0 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC25.2■■□□□ 1.63
USHBP1Q8N6Y0 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC25.2■■□□□ 1.63
USHBP1Q8N6Y0 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC25.2■■□□□ 1.63
USHBP1Q8N6Y0 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC25.2■■□□□ 1.63
USHBP1Q8N6Y0 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 AL450487.1-201ENST00000426799 995 ntBASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
USHBP1Q8N6Y0 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 AL023284.2-201ENST00000405850 579 ntBASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 RASA4DP-201ENST00000460726 1199 ntBASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 PCDHAC2-203ENST00000615316 3011 ntBASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USHBP1Q8N6Y0 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 PWWP2AP1-201ENST00000429776 2273 ntBASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC25.18■■□□□ 1.62
USHBP1Q8N6Y0 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 TPM4P1-201ENST00000436100 807 ntBASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 AC092119.3-201ENST00000612618 583 ntBASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC25.17■■□□□ 1.62
USHBP1Q8N6Y0 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms