Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 PHB2-202ENST00000440277 996 ntTSL 5 BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 MPI-205ENST00000562606 1052 ntTSL 3 BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CSPG4Q6UVK1 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 ILF2-202ENST00000368681 726 ntTSL 2 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 KRT18P31-201ENST00000506277 1292 ntBASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 TSPY19P-201ENST00000418461 509 ntBASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 CHCHD2P8-201ENST00000429873 447 ntBASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 TSPY18P-201ENST00000441642 509 ntBASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 NUS1P1-201ENST00000446295 882 ntBASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 RASA4DP-201ENST00000460726 1199 ntBASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CSPG4Q6UVK1 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 AC106795.1-205ENST00000512851 1056 ntBASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 AC092720.2-201ENST00000602388 1665 ntBASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 AC036111.1-201ENST00000533973 1582 ntBASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms