Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.44■□□□□ 0.86
VCPP55072 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VCPP55072 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VCPP55072 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.43■□□□□ 0.86
VCPP55072 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
VCPP55072 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
VCPP55072 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VCPP55072 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VCPP55072 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VCPP55072 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.43■□□□□ 0.86
VCPP55072 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
VCPP55072 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.43■□□□□ 0.86
VCPP55072 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.43■□□□□ 0.86
VCPP55072 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.43■□□□□ 0.86
VCPP55072 C2orf69P3-201ENST00000565542 1120 ntBASIC20.43■□□□□ 0.86
VCPP55072 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.43■□□□□ 0.86
VCPP55072 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.43■□□□□ 0.86
VCPP55072 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
VCPP55072 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VCPP55072 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.43■□□□□ 0.86
VCPP55072 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
VCPP55072 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
VCPP55072 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
VCPP55072 KRT16P1-201ENST00000399124 1418 ntBASIC20.43■□□□□ 0.86
VCPP55072 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.43■□□□□ 0.86
VCPP55072 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VCPP55072 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
VCPP55072 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.42■□□□□ 0.86
VCPP55072 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
VCPP55072 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VCPP55072 FAM8A6P-201ENST00000407496 1135 ntBASIC20.42■□□□□ 0.86
VCPP55072 KSR1P1-201ENST00000446298 240 ntBASIC20.42■□□□□ 0.86
VCPP55072 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.42■□□□□ 0.86
VCPP55072 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.42■□□□□ 0.86
VCPP55072 AC093458.2-201ENST00000623150 629 ntBASIC20.42■□□□□ 0.86
VCPP55072 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VCPP55072 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
VCPP55072 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
VCPP55072 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VCPP55072 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
VCPP55072 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.42■□□□□ 0.86
VCPP55072 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.41■□□□□ 0.86
VCPP55072 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
VCPP55072 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 NIFKP9-201ENST00000419265 221 ntBASIC20.41■□□□□ 0.86
VCPP55072 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.41■□□□□ 0.86
VCPP55072 AC091390.4-202ENST00000476426 537 ntBASIC20.41■□□□□ 0.86
VCPP55072 EGLN1P1-201ENST00000531623 762 ntBASIC20.41■□□□□ 0.86
VCPP55072 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.41■□□□□ 0.86
VCPP55072 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.41■□□□□ 0.86
VCPP55072 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 AC018553.1-201ENST00000616682 1458 ntBASIC20.41■□□□□ 0.86
VCPP55072 PHGDH-210ENST00000641115 1638 ntBASIC20.41■□□□□ 0.86
VCPP55072 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.41■□□□□ 0.86
VCPP55072 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
VCPP55072 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
VCPP55072 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
VCPP55072 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.41■□□□□ 0.86
VCPP55072 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VCPP55072 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VCPP55072 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCPP55072 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCPP55072 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCPP55072 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCPP55072 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.4■□□□□ 0.86
VCPP55072 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCPP55072 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCPP55072 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
VCPP55072 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCPP55072 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCPP55072 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.4■□□□□ 0.86
VCPP55072 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCPP55072 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.4■□□□□ 0.86
VCPP55072 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.4■□□□□ 0.86
VCPP55072 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.4■□□□□ 0.86
VCPP55072 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.4■□□□□ 0.86
VCPP55072 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.4■□□□□ 0.86
VCPP55072 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.4■□□□□ 0.86
VCPP55072 AC116351.2-201ENST00000606540 1585 ntBASIC20.4■□□□□ 0.86
VCPP55072 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.4■□□□□ 0.86
VCPP55072 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms