Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC26.49■■□□□ 1.83
MSH6P52701 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
MSH6P52701 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC26.49■■□□□ 1.83
MSH6P52701 SMG8-203ENST00000578922 2178 ntBASIC26.49■■□□□ 1.83
MSH6P52701 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC26.49■■□□□ 1.83
MSH6P52701 AC007375.3-201ENST00000600936 2314 ntBASIC26.49■■□□□ 1.83
MSH6P52701 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC26.49■■□□□ 1.83
MSH6P52701 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
MSH6P52701 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
MSH6P52701 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC26.49■■□□□ 1.83
MSH6P52701 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC26.49■■□□□ 1.83
MSH6P52701 AC099336.1-202ENST00000602961 463 ntBASIC26.49■■□□□ 1.83
MSH6P52701 AC064862.7-201ENST00000604520 867 ntBASIC26.49■■□□□ 1.83
MSH6P52701 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC26.49■■□□□ 1.83
MSH6P52701 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC26.49■■□□□ 1.83
MSH6P52701 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
MSH6P52701 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC26.49■■□□□ 1.83
MSH6P52701 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
MSH6P52701 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
MSH6P52701 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
MSH6P52701 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
MSH6P52701 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
MSH6P52701 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
MSH6P52701 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC26.49■■□□□ 1.83
MSH6P52701 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
MSH6P52701 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
MSH6P52701 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC26.48■■□□□ 1.83
MSH6P52701 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC26.48■■□□□ 1.83
MSH6P52701 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
MSH6P52701 TP73-AS1-207ENST00000624167 988 ntBASIC26.48■■□□□ 1.83
MSH6P52701 UBC-206ENST00000538617 1303 ntTSL 5 BASIC26.47■■□□□ 1.83
MSH6P52701 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
MSH6P52701 TLE1-202ENST00000376484 666 ntTSL 3 BASIC26.47■■□□□ 1.83
MSH6P52701 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
MSH6P52701 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 GRAMD4P1-201ENST00000435181 1110 ntBASIC26.47■■□□□ 1.83
MSH6P52701 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC26.47■■□□□ 1.83
MSH6P52701 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 REXO1L6P-202ENST00000619970 1078 ntBASIC26.47■■□□□ 1.83
MSH6P52701 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC26.47■■□□□ 1.83
MSH6P52701 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC26.47■■□□□ 1.83
MSH6P52701 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
MSH6P52701 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
MSH6P52701 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC26.46■■□□□ 1.83
MSH6P52701 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
MSH6P52701 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC26.46■■□□□ 1.83
MSH6P52701 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
MSH6P52701 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
MSH6P52701 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
MSH6P52701 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
MSH6P52701 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
MSH6P52701 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC26.46■■□□□ 1.83
MSH6P52701 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
MSH6P52701 AC233702.3-201ENST00000578656 1387 ntBASIC26.46■■□□□ 1.83
MSH6P52701 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
MSH6P52701 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
MSH6P52701 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC26.46■■□□□ 1.83
MSH6P52701 MIR3917-201ENST00000580971 93 ntBASIC26.46■■□□□ 1.83
MSH6P52701 AL773604.1-201ENST00000617417 272 ntBASIC26.46■■□□□ 1.83
MSH6P52701 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
MSH6P52701 Z83836.1-201ENST00000624605 1642 ntBASIC26.45■■□□□ 1.83
MSH6P52701 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC26.45■■□□□ 1.83
MSH6P52701 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC26.45■■□□□ 1.82
MSH6P52701 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
MSH6P52701 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
MSH6P52701 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.82
MSH6P52701 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
MSH6P52701 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
MSH6P52701 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC26.45■■□□□ 1.82
MSH6P52701 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
MSH6P52701 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
MSH6P52701 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC26.45■■□□□ 1.82
MSH6P52701 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
MSH6P52701 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC26.45■■□□□ 1.82
MSH6P52701 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
MSH6P52701 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC26.45■■□□□ 1.82
MSH6P52701 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
MSH6P52701 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC26.45■■□□□ 1.82
MSH6P52701 AC090616.6-201ENST00000582640 721 ntBASIC26.45■■□□□ 1.82
MSH6P52701 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC26.45■■□□□ 1.82
MSH6P52701 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
MSH6P52701 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
MSH6P52701 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC26.44■■□□□ 1.82
MSH6P52701 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
MSH6P52701 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC26.44■■□□□ 1.82
MSH6P52701 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC26.44■■□□□ 1.82
MSH6P52701 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC26.44■■□□□ 1.82
MSH6P52701 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC26.44■■□□□ 1.82
MSH6P52701 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC26.44■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms