Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.22■□□□□ 0.67
PDGFBP01127 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PDGFBP01127 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
PDGFBP01127 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
PDGFBP01127 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDGFBP01127 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDGFBP01127 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDGFBP01127 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDGFBP01127 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.22■□□□□ 0.67
PDGFBP01127 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDGFBP01127 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
PDGFBP01127 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
PDGFBP01127 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC19.22■□□□□ 0.67
PDGFBP01127 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.22■□□□□ 0.67
PDGFBP01127 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDGFBP01127 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
PDGFBP01127 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.22■□□□□ 0.67
PDGFBP01127 REXO1L6P-202ENST00000619970 1078 ntBASIC19.22■□□□□ 0.67
PDGFBP01127 AP001271.2-201ENST00000624018 1556 ntBASIC19.22■□□□□ 0.67
PDGFBP01127 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDGFBP01127 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
PDGFBP01127 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
PDGFBP01127 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
PDGFBP01127 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.22■□□□□ 0.67
PDGFBP01127 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.22■□□□□ 0.67
PDGFBP01127 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PDGFBP01127 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDGFBP01127 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDGFBP01127 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDGFBP01127 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDGFBP01127 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDGFBP01127 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.21■□□□□ 0.67
PDGFBP01127 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PDGFBP01127 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PDGFBP01127 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDGFBP01127 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
PDGFBP01127 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PDGFBP01127 BX842568.4-201ENST00000421222 227 ntBASIC19.21■□□□□ 0.67
PDGFBP01127 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.21■□□□□ 0.67
PDGFBP01127 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PDGFBP01127 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.21■□□□□ 0.67
PDGFBP01127 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.21■□□□□ 0.67
PDGFBP01127 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
PDGFBP01127 AL773604.1-201ENST00000617417 272 ntBASIC19.21■□□□□ 0.67
PDGFBP01127 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDGFBP01127 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
PDGFBP01127 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDGFBP01127 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.2■□□□□ 0.66
PDGFBP01127 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.2■□□□□ 0.66
PDGFBP01127 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
PDGFBP01127 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDGFBP01127 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.2■□□□□ 0.66
PDGFBP01127 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.2■□□□□ 0.66
PDGFBP01127 AL023284.2-201ENST00000405850 579 ntBASIC19.2■□□□□ 0.66
PDGFBP01127 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.2■□□□□ 0.66
PDGFBP01127 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.2■□□□□ 0.66
PDGFBP01127 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.2■□□□□ 0.66
PDGFBP01127 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
PDGFBP01127 MIR3917-201ENST00000580971 93 ntBASIC19.2■□□□□ 0.66
PDGFBP01127 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.2■□□□□ 0.66
PDGFBP01127 IGHV3-41-201ENST00000613121 348 ntBASIC19.2■□□□□ 0.66
PDGFBP01127 AC148477.8-201ENST00000624298 468 ntBASIC19.2■□□□□ 0.66
PDGFBP01127 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PDGFBP01127 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PDGFBP01127 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
PDGFBP01127 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.19■□□□□ 0.66
PDGFBP01127 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.19■□□□□ 0.66
PDGFBP01127 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.19■□□□□ 0.66
PDGFBP01127 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 IGHV3-47-201ENST00000425060 335 ntBASIC19.19■□□□□ 0.66
PDGFBP01127 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.19■□□□□ 0.66
PDGFBP01127 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
PDGFBP01127 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
PDGFBP01127 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.19■□□□□ 0.66
PDGFBP01127 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 AL355385.1-201ENST00000606123 409 ntBASIC19.19■□□□□ 0.66
PDGFBP01127 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.19■□□□□ 0.66
PDGFBP01127 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
PDGFBP01127 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 PMS2P7-201ENST00000506558 1336 ntBASIC19.19■□□□□ 0.66
PDGFBP01127 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 AC022898.2-201ENST00000616822 1312 ntBASIC19.19■□□□□ 0.66
PDGFBP01127 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PDGFBP01127 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
PDGFBP01127 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDGFBP01127 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PDGFBP01127 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDGFBP01127 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms