Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Nkx2-1P50220 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Nkx2-1P50220 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Nkx2-1P50220 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nkx2-1P50220 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nkx2-1P50220 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Nkx2-1P50220 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Nkx2-1P50220 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nkx2-1P50220 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
Nkx2-1P50220 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nkx2-1P50220 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nkx2-1P50220 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC19.13■□□□□ 0.65
Nkx2-1P50220 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx2-1P50220 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx2-1P50220 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx2-1P50220 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx2-1P50220 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx2-1P50220 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Nkx2-1P50220 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx2-1P50220 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx2-1P50220 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx2-1P50220 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx2-1P50220 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx2-1P50220 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC19.11■□□□□ 0.65
Nkx2-1P50220 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx2-1P50220 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Nkx2-1P50220 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx2-1P50220 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx2-1P50220 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx2-1P50220 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx2-1P50220 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC19.09■□□□□ 0.65
Nkx2-1P50220 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx2-1P50220 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx2-1P50220 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx2-1P50220 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx2-1P50220 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Nkx2-1P50220 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Nkx2-1P50220 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Nkx2-1P50220 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Nkx2-1P50220 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Nkx2-1P50220 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nkx2-1P50220 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Nkx2-1P50220 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Nkx2-1P50220 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nkx2-1P50220 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Nkx2-1P50220 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nkx2-1P50220 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nkx2-1P50220 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Nkx2-1P50220 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Nkx2-1P50220 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nkx2-1P50220 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Nkx2-1P50220 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nkx2-1P50220 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Nkx2-1P50220 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Nkx2-1P50220 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Nkx2-1P50220 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Nkx2-1P50220 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
Nkx2-1P50220 Gm17641-201ENSMUST00000166328 2350 ntBASIC19.04■□□□□ 0.64
Nkx2-1P50220 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Nkx2-1P50220 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nkx2-1P50220 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nkx2-1P50220 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nkx2-1P50220 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC19.02■□□□□ 0.64
Nkx2-1P50220 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
Nkx2-1P50220 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
Nkx2-1P50220 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Nkx2-1P50220 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC19.01■□□□□ 0.63
Nkx2-1P50220 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Nkx2-1P50220 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.01■□□□□ 0.63
Nkx2-1P50220 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Nkx2-1P50220 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC19■□□□□ 0.63
Nkx2-1P50220 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Nkx2-1P50220 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Nkx2-1P50220 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Nkx2-1P50220 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
Nkx2-1P50220 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.99■□□□□ 0.63
Nkx2-1P50220 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Nkx2-1P50220 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Nkx2-1P50220 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Nkx2-1P50220 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Nkx2-1P50220 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Nkx2-1P50220 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC18.98■□□□□ 0.63
Nkx2-1P50220 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Nkx2-1P50220 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Nkx2-1P50220 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Nkx2-1P50220 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Nkx2-1P50220 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Nkx2-1P50220 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Nkx2-1P50220 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC18.96■□□□□ 0.63
Nkx2-1P50220 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Nkx2-1P50220 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Nkx2-1P50220 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Nkx2-1P50220 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Nkx2-1P50220 Zfp131-205ENSMUST00000223812 663 ntBASIC18.95■□□□□ 0.62
Nkx2-1P50220 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Nkx2-1P50220 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Nkx2-1P50220 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Nkx2-1P50220 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Nkx2-1P50220 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nkx2-1P50220 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms