Protein–RNA interactions for Protein: P35582

Foxa1, Hepatocyte nuclear factor 3-alpha, mousemouse

Predictions only

Length 468 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxa1P35582 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Foxa1P35582 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Foxa1P35582 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Foxa1P35582 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Foxa1P35582 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
Foxa1P35582 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Foxa1P35582 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Foxa1P35582 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Foxa1P35582 Gm37136-201ENSMUST00000194368 194 ntBASIC21.53■■□□□ 1.04
Foxa1P35582 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Foxa1P35582 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Foxa1P35582 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Foxa1P35582 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Foxa1P35582 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.51■■□□□ 1.03
Foxa1P35582 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Foxa1P35582 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Foxa1P35582 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC21.5■■□□□ 1.03
Foxa1P35582 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Foxa1P35582 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Foxa1P35582 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Foxa1P35582 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Foxa1P35582 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Foxa1P35582 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.49■■□□□ 1.03
Foxa1P35582 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Foxa1P35582 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.48■■□□□ 1.03
Foxa1P35582 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
Foxa1P35582 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Foxa1P35582 Gm11599-201ENSMUST00000118720 878 ntBASIC21.48■■□□□ 1.03
Foxa1P35582 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Foxa1P35582 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Foxa1P35582 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Foxa1P35582 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Foxa1P35582 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Foxa1P35582 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.47■■□□□ 1.03
Foxa1P35582 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.46■■□□□ 1.03
Foxa1P35582 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Foxa1P35582 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Foxa1P35582 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Foxa1P35582 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.45■■□□□ 1.02
Foxa1P35582 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Foxa1P35582 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Foxa1P35582 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Foxa1P35582 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC21.43■■□□□ 1.02
Foxa1P35582 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC21.43■■□□□ 1.02
Foxa1P35582 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Foxa1P35582 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Foxa1P35582 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Foxa1P35582 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC21.42■■□□□ 1.02
Foxa1P35582 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Foxa1P35582 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Foxa1P35582 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.41■■□□□ 1.02
Foxa1P35582 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Foxa1P35582 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
Foxa1P35582 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Foxa1P35582 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Foxa1P35582 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
Foxa1P35582 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Foxa1P35582 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Foxa1P35582 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Foxa1P35582 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.39■■□□□ 1.01
Foxa1P35582 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Foxa1P35582 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Foxa1P35582 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Foxa1P35582 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
Foxa1P35582 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Foxa1P35582 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Foxa1P35582 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Foxa1P35582 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Foxa1P35582 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Foxa1P35582 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Foxa1P35582 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
Foxa1P35582 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Foxa1P35582 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Foxa1P35582 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Foxa1P35582 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC21.32■■□□□ 1
Foxa1P35582 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Foxa1P35582 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC21.32■■□□□ 1
Foxa1P35582 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Foxa1P35582 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Foxa1P35582 Gm4799-201ENSMUST00000095396 657 ntBASIC21.31■■□□□ 1
Foxa1P35582 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Foxa1P35582 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Foxa1P35582 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Foxa1P35582 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
Foxa1P35582 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Foxa1P35582 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Foxa1P35582 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Foxa1P35582 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Foxa1P35582 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Foxa1P35582 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC21.28■■□□□ 1
Foxa1P35582 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Foxa1P35582 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Foxa1P35582 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Foxa1P35582 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Foxa1P35582 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Foxa1P35582 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Foxa1P35582 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Foxa1P35582 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Foxa1P35582 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Foxa1P35582 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms