Protein–RNA interactions for Protein: P35582

Foxa1, Hepatocyte nuclear factor 3-alpha, mousemouse

Predictions only

Length 468 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxa1P35582 Gm25239-201ENSMUST00000174915 86 ntBASIC34.45■■■■□ 3.11
Foxa1P35582 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Foxa1P35582 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Foxa1P35582 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Foxa1P35582 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Foxa1P35582 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
Foxa1P35582 Gm15042-201ENSMUST00000120212 883 ntBASIC30.46■■■□□ 2.47
Foxa1P35582 Gm15045-201ENSMUST00000117359 883 ntBASIC29.85■■■□□ 2.37
Foxa1P35582 Gm24109-201ENSMUST00000175489 103 ntBASIC29.68■■■□□ 2.34
Foxa1P35582 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Foxa1P35582 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Foxa1P35582 Psd-208ENSMUST00000224556 2034 ntBASIC29.25■■■□□ 2.27
Foxa1P35582 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
Foxa1P35582 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC29.02■■■□□ 2.24
Foxa1P35582 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.22
Foxa1P35582 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Foxa1P35582 Gm23366-201ENSMUST00000175022 89 ntBASIC28.81■■■□□ 2.2
Foxa1P35582 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
Foxa1P35582 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Foxa1P35582 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
Foxa1P35582 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Foxa1P35582 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.15
Foxa1P35582 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC28.4■■■□□ 2.14
Foxa1P35582 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.13
Foxa1P35582 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Foxa1P35582 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Foxa1P35582 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC28.27■■■□□ 2.12
Foxa1P35582 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Foxa1P35582 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Foxa1P35582 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Foxa1P35582 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
Foxa1P35582 AC153911.1-202ENSMUST00000218534 1034 ntBASIC27.98■■■□□ 2.07
Foxa1P35582 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC27.92■■■□□ 2.06
Foxa1P35582 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
Foxa1P35582 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Foxa1P35582 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Foxa1P35582 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Foxa1P35582 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Foxa1P35582 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
Foxa1P35582 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC27.46■■□□□ 1.99
Foxa1P35582 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.41■■□□□ 1.98
Foxa1P35582 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Foxa1P35582 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Foxa1P35582 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC27.18■■□□□ 1.94
Foxa1P35582 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC27.17■■□□□ 1.94
Foxa1P35582 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Foxa1P35582 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
Foxa1P35582 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
Foxa1P35582 Gm25238-201ENSMUST00000174914 89 ntBASIC27.07■■□□□ 1.92
Foxa1P35582 Gm10524-201ENSMUST00000181931 1893 ntBASIC27.02■■□□□ 1.92
Foxa1P35582 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Foxa1P35582 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Foxa1P35582 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC26.99■■□□□ 1.91
Foxa1P35582 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Foxa1P35582 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Foxa1P35582 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Foxa1P35582 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Foxa1P35582 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Foxa1P35582 Gm27325-201ENSMUST00000175467 74 ntBASIC26.76■■□□□ 1.87
Foxa1P35582 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Foxa1P35582 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
Foxa1P35582 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC26.65■■□□□ 1.86
Foxa1P35582 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC26.64■■□□□ 1.85
Foxa1P35582 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC26.63■■□□□ 1.85
Foxa1P35582 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
Foxa1P35582 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Foxa1P35582 CT025624.2-201ENSMUST00000223609 1909 ntBASIC26.55■■□□□ 1.84
Foxa1P35582 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
Foxa1P35582 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC26.54■■□□□ 1.84
Foxa1P35582 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
Foxa1P35582 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Foxa1P35582 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Foxa1P35582 Gm42596-201ENSMUST00000196305 1958 ntBASIC26.46■■□□□ 1.83
Foxa1P35582 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
Foxa1P35582 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Foxa1P35582 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Foxa1P35582 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC26.29■■□□□ 1.8
Foxa1P35582 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC26.28■■□□□ 1.8
Foxa1P35582 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Foxa1P35582 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Foxa1P35582 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
Foxa1P35582 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC26.14■■□□□ 1.77
Foxa1P35582 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC26.07■■□□□ 1.76
Foxa1P35582 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Foxa1P35582 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
Foxa1P35582 Rab21-202ENSMUST00000218831 843 ntBASIC26.02■■□□□ 1.76
Foxa1P35582 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Foxa1P35582 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Foxa1P35582 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Foxa1P35582 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Foxa1P35582 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Foxa1P35582 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Foxa1P35582 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
Foxa1P35582 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC25.89■■□□□ 1.74
Foxa1P35582 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.73
Foxa1P35582 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC25.84■■□□□ 1.73
Foxa1P35582 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Foxa1P35582 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Foxa1P35582 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC25.77■■□□□ 1.72
Foxa1P35582 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms