Protein–RNA interactions for Protein: P32958

Rom1, Rod outer segment membrane protein 1, mousemouse

Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rom1P32958 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rom1P32958 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Rom1P32958 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rom1P32958 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Rom1P32958 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rom1P32958 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rom1P32958 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Rom1P32958 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Rom1P32958 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Rom1P32958 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Rom1P32958 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.37■□□□□ 0.53
Rom1P32958 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC18.36■□□□□ 0.53
Rom1P32958 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rom1P32958 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rom1P32958 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Rom1P32958 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rom1P32958 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Rom1P32958 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Rom1P32958 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Rom1P32958 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rom1P32958 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC18.33■□□□□ 0.52
Rom1P32958 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rom1P32958 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rom1P32958 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rom1P32958 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rom1P32958 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Rom1P32958 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rom1P32958 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rom1P32958 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rom1P32958 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rom1P32958 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.31■□□□□ 0.52
Rom1P32958 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Rom1P32958 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC18.3■□□□□ 0.52
Rom1P32958 Particl-201ENSMUST00000205370 1560 ntBASIC18.3■□□□□ 0.52
Rom1P32958 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Rom1P32958 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
Rom1P32958 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rom1P32958 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC18.29■□□□□ 0.52
Rom1P32958 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rom1P32958 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rom1P32958 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rom1P32958 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.28■□□□□ 0.52
Rom1P32958 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rom1P32958 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rom1P32958 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rom1P32958 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rom1P32958 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rom1P32958 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rom1P32958 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rom1P32958 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Rom1P32958 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rom1P32958 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Rom1P32958 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rom1P32958 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rom1P32958 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rom1P32958 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Rom1P32958 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
Rom1P32958 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rom1P32958 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rom1P32958 Gm37847-201ENSMUST00000192163 1497 ntBASIC18.26■□□□□ 0.51
Rom1P32958 Gm31748-201ENSMUST00000194938 1497 ntBASIC18.26■□□□□ 0.51
Rom1P32958 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rom1P32958 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rom1P32958 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rom1P32958 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rom1P32958 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Rom1P32958 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rom1P32958 Gm42699-201ENSMUST00000198104 1657 ntBASIC18.25■□□□□ 0.51
Rom1P32958 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Rom1P32958 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rom1P32958 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rom1P32958 Gm16148-201ENSMUST00000119653 893 ntBASIC18.24■□□□□ 0.51
Rom1P32958 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rom1P32958 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Rom1P32958 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rom1P32958 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Rom1P32958 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rom1P32958 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rom1P32958 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rom1P32958 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rom1P32958 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
Rom1P32958 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rom1P32958 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rom1P32958 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rom1P32958 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rom1P32958 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rom1P32958 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rom1P32958 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rom1P32958 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rom1P32958 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rom1P32958 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Rom1P32958 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Rom1P32958 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Rom1P32958 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rom1P32958 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rom1P32958 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rom1P32958 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Rom1P32958 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rom1P32958 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rom1P32958 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms