Protein–RNA interactions for Protein: O88456

Capns1, Calpain small subunit 1, mousemouse

Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Capns1O88456 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Capns1O88456 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Capns1O88456 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Capns1O88456 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Capns1O88456 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Capns1O88456 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Capns1O88456 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Capns1O88456 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Capns1O88456 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC21.3■■□□□ 1
Capns1O88456 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.3■■□□□ 1
Capns1O88456 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC21.3■■□□□ 1
Capns1O88456 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Capns1O88456 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC21.29■■□□□ 1
Capns1O88456 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.29■■□□□ 1
Capns1O88456 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.29■■□□□ 1
Capns1O88456 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
Capns1O88456 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Capns1O88456 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.29■■□□□ 1
Capns1O88456 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Capns1O88456 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Capns1O88456 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Capns1O88456 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
Capns1O88456 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Capns1O88456 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Capns1O88456 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Capns1O88456 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Capns1O88456 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Capns1O88456 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Capns1O88456 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.24■□□□□ 0.99
Capns1O88456 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Capns1O88456 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Capns1O88456 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Capns1O88456 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Capns1O88456 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Capns1O88456 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Capns1O88456 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Capns1O88456 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Capns1O88456 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Capns1O88456 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Capns1O88456 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Capns1O88456 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Capns1O88456 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Capns1O88456 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Capns1O88456 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.21■□□□□ 0.99
Capns1O88456 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Capns1O88456 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.99
Capns1O88456 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Capns1O88456 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Capns1O88456 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.2■□□□□ 0.98
Capns1O88456 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Capns1O88456 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Capns1O88456 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Capns1O88456 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
Capns1O88456 Gm6821-201ENSMUST00000107540 542 ntBASIC21.18■□□□□ 0.98
Capns1O88456 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Capns1O88456 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Capns1O88456 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Capns1O88456 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC21.17■□□□□ 0.98
Capns1O88456 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Capns1O88456 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Capns1O88456 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Capns1O88456 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Capns1O88456 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Capns1O88456 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Capns1O88456 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.15■□□□□ 0.98
Capns1O88456 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Capns1O88456 Gm20634-201ENSMUST00000090779 2956 ntBASIC21.15■□□□□ 0.98
Capns1O88456 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Capns1O88456 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC21.14■□□□□ 0.98
Capns1O88456 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Capns1O88456 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Capns1O88456 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Capns1O88456 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Capns1O88456 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Capns1O88456 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Capns1O88456 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Capns1O88456 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Capns1O88456 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Capns1O88456 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Capns1O88456 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Capns1O88456 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Capns1O88456 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Capns1O88456 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.12■□□□□ 0.97
Capns1O88456 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Capns1O88456 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Capns1O88456 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Capns1O88456 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Capns1O88456 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Capns1O88456 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Capns1O88456 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC21.1■□□□□ 0.97
Capns1O88456 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Capns1O88456 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC21.09■□□□□ 0.97
Capns1O88456 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Capns1O88456 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
Capns1O88456 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Capns1O88456 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Capns1O88456 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.96
Capns1O88456 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Capns1O88456 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Capns1O88456 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 154.5 ms