Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
USP3Q9Y6I4 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
USP3Q9Y6I4 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 AC097063.1-201ENST00000426714 1797 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 Y_RNA.48-201ENST00000362710 103 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 RNU6-280P-201ENST00000364145 104 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 RNY3P11-201ENST00000364153 102 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 U8.8-201ENST00000365399 135 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 Y_RNA.534-201ENST00000384599 112 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 SNORD58.1-201ENST00000391313 66 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 AL078599.1-201ENST00000402075 293 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 RPL21P67-201ENST00000402896 478 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 RN7SKP16-201ENST00000410180 299 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 RNU2-25P-201ENST00000411041 191 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 CEACAMP7-201ENST00000444105 496 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 RNU7-169P-201ENST00000459456 61 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 RNU6-1037P-201ENST00000459571 107 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 AC007016.1-201ENST00000512110 244 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 AC004980.4-201ENST00000513375 203 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 RNU4-71P-201ENST00000516258 113 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 TRAV32-201ENST00000553993 340 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 AC068446.3-201ENST00000555285 382 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 RMST_4.1-201ENST00000616886 107 ntBASIC5.38□□□□□ -1.55
USP3Q9Y6I4 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.38□□□□□ -1.55
USP3Q9Y6I4 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 Y_RNA.324-201ENST00000365165 102 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 RNA5SP223-201ENST00000365174 120 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 Y_RNA.352-201ENST00000365439 102 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 SNORA19-201ENST00000384737 128 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 MIR578-201ENST00000384828 96 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 RNU6-1203P-201ENST00000410703 110 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 RPL7AP73-201ENST00000413490 353 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 AC093162.1-201ENST00000419682 124 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 MRPS21P2-201ENST00000424704 264 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 RPEP5-201ENST00000441137 268 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 RPL7AP61-201ENST00000443410 636 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 RPS23P5-201ENST00000495419 428 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 AC093799.2-201ENST00000610062 578 ntBASIC5.37□□□□□ -1.55
USP3Q9Y6I4 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC5.37□□□□□ -1.55
USP3Q9Y6I4 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 AC063979.1-201ENST00000415539 377 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 MYL8P-204ENST00000431574 518 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 USP9YP7-201ENST00000436723 430 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 RPL34P20-201ENST00000442771 351 ntBASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms