Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AL359922.3-201ENST00000624779 1670 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 RNU1-20P-201ENST00000363314 162 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 RN7SKP53-201ENST00000411337 315 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 BTF3L4P3-201ENST00000418879 476 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 UBE2D3P2-201ENST00000424409 445 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 AC007919.1-201ENST00000429380 217 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 C8orf59P1-201ENST00000429930 303 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 MTATP6P16-201ENST00000434543 526 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 SNORA71B-202ENST00000439232 272 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 RPL23AP81-201ENST00000455252 467 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 HMGB3P16-201ENST00000508037 287 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 AC025449.1-201ENST00000603896 529 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 AL592436.1-201ENST00000605135 558 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 AF250324.2-201ENST00000608299 610 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 Z82217.1-201ENST00000625157 8149 ntBASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
CCDC9Q9Y3X0 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 RNA5SP22-201ENST00000365393 109 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 RNU6-190P-201ENST00000384154 102 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 RNU6-817P-201ENST00000391083 104 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 AL592291.1-201ENST00000403830 352 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 AP000567.1-201ENST00000406413 156 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 RN7SKP156-201ENST00000410308 342 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 SDCBPP3-201ENST00000419629 891 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 MTND1P4-201ENST00000435196 415 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 RPL23AP20-201ENST00000447965 421 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 AC093392.2-201ENST00000450682 337 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 FABP5P13-201ENST00000452144 328 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 RPL30P5-201ENST00000494923 336 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 TTC39CP1-201ENST00000512513 755 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 RNU6-677P-201ENST00000516914 101 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 RN7SKP60-201ENST00000516985 239 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 HMGB1P6-201ENST00000569046 646 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 AL365204.3-201ENST00000612448 685 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 AL157786.1-207ENST00000627771 695 ntBASIC5.61□□□□□ -1.51
CCDC9Q9Y3X0 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 RNU6-1085P-201ENST00000363576 107 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 RNU1-63P-201ENST00000383902 164 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 MIR30B-201ENST00000384850 88 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 FAT1P1-201ENST00000406588 507 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 HMGN2P31-201ENST00000432430 273 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 CEACAMP4-201ENST00000457676 421 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 AC126182.1-201ENST00000478134 357 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 AC074250.1-201ENST00000511117 192 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 SNORA31.3-201ENST00000516029 96 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 RANP9-201ENST00000519957 271 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 AC015912.2-201ENST00000571053 181 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 AC022655.2-201ENST00000577280 318 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 AC091178.1-203ENST00000584586 279 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 AC005609.4-201ENST00000625071 447 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms