Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SHROOM4Q9ULL8 RPL21P132-201ENST00000331267 462 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 Y_RNA.234-201ENST00000364409 97 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 RNU6-882P-201ENST00000391025 103 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 MIR1183-201ENST00000408856 89 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 RNU2-43P-201ENST00000410306 190 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 MTCO1P17-201ENST00000411522 491 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 snoU13.26-201ENST00000459452 105 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 RPL30P9-201ENST00000465586 330 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 AC093809.1-201ENST00000509155 340 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 SNORA70.14-201ENST00000516205 110 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 IGKV2D-23-201ENST00000518179 286 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 AC104027.1-201ENST00000521887 300 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 AL391156.1-201ENST00000554965 554 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 AC136618.2-201ENST00000575091 400 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 AC012443.1-201ENST00000605605 231 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 AC024560.3-201ENST00000608482 349 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 TAB3P1-202ENST00000452645 1634 ntBASIC5.6□□□□□ -1.51
SHROOM4Q9ULL8 RNU6-343P-201ENST00000364709 104 ntBASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 AC098592.1-201ENST00000419352 333 ntBASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 LSM1P1-201ENST00000438629 273 ntBASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 OR6K5P-201ENST00000447050 945 ntBASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 POU5F1P7-201ENST00000508759 541 ntBASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 AC022483.1-201ENST00000514020 567 ntBASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 RNU6-528P-201ENST00000516926 100 ntBASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 AC013444.2-201ENST00000603317 787 ntBASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 AL353748.2-201ENST00000622148 471 ntBASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SHROOM4Q9ULL8 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
SHROOM4Q9ULL8 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 Y_RNA.18-201ENST00000362461 102 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 RNU6-744P-201ENST00000365557 107 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 RNU6-1316P-201ENST00000384242 108 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 RN7SKP266-201ENST00000410232 287 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 SRIP2-201ENST00000428470 166 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AC087499.2-201ENST00000432861 149 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AL606662.1-201ENST00000445763 553 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 SNORD109B-201ENST00000458961 67 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 SNORD109A-201ENST00000459128 67 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 OR5G4P-201ENST00000525251 760 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AC034268.2-201ENST00000571784 482 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 ISCA1P3-201ENST00000577104 373 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AC021171.1-201ENST00000603137 706 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AC064859.1-201ENST00000624741 174 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 MIR887-201ENST00000401258 79 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 RPL21P32-201ENST00000419877 477 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 snoU13.23-201ENST00000458863 104 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 RPL23AP62-201ENST00000463396 453 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 NIPA2P2-201ENST00000496376 1083 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 MED28P6-201ENST00000558776 231 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AC234778.2-201ENST00000566241 354 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AL158211.4-201ENST00000606988 584 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 AP002826.1-201ENST00000608835 315 ntBASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC5.58□□□□□ -1.52
SHROOM4Q9ULL8 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SHROOM4Q9ULL8 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHROOM4Q9ULL8 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC5.57□□□□□ -1.52
SHROOM4Q9ULL8 AL391994.1-201ENST00000254724 282 ntBASIC5.57□□□□□ -1.52
SHROOM4Q9ULL8 RNU6-1078P-201ENST00000364522 103 ntBASIC5.57□□□□□ -1.52
SHROOM4Q9ULL8 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms