Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC093831.2-201ENST00000624393 3427 ntBASIC2.95□□□□□ -1.94
LHX3Q9UBR4 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.95□□□□□ -1.94
LHX3Q9UBR4 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.95□□□□□ -1.94
LHX3Q9UBR4 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 RNU5E-8P-201ENST00000363502 116 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 RNU6-723P-201ENST00000383973 107 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 RNU6-1197P-201ENST00000391183 107 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 RPL5P18-201ENST00000406671 891 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 RN7SKP266-201ENST00000410232 287 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 RNA5SP38-201ENST00000410750 119 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AL035407.1-201ENST00000429211 571 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AL356867.1-201ENST00000429623 299 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 LSM1P1-201ENST00000438629 273 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 RPL21P41-201ENST00000459863 264 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AC034222.1-201ENST00000494052 532 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 MTND5P4-201ENST00000514978 288 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 SNORA31.1-201ENST00000515993 133 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 SNORA31.5-201ENST00000516190 133 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 SNORD59.2-201ENST00000516873 68 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 SETP2-201ENST00000553886 926 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AC009097.3-201ENST00000563557 1018 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AL033523.1-201ENST00000605153 153 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AL356596.1-201ENST00000624230 379 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AC079597.1-201ENST00000624306 508 ntBASIC2.94□□□□□ -1.94
LHX3Q9UBR4 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.94□□□□□ -1.94
LHX3Q9UBR4 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AC011460.1-201ENST00000636268 1834 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 RPL21P132-201ENST00000331267 462 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AL672167.1-206ENST00000356293 943 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 SNORD113-6-201ENST00000363345 75 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 RNU6-853P-201ENST00000364306 107 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 MIR23A-201ENST00000385245 73 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 U3.20-201ENST00000390909 217 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 RNU1-101P-201ENST00000391171 127 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 MTND1P21-201ENST00000412991 285 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AC018630.2-202ENST00000422992 927 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AL117351.1-201ENST00000438864 766 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AP000542.1-201ENST00000448473 371 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 MRPS36P3-201ENST00000519284 130 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 HMGN1P28-201ENST00000521340 364 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 IGHV3-76-201ENST00000522465 295 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AC107016.2-201ENST00000547968 190 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 EIF4BP1-201ENST00000554881 351 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AC034105.3-201ENST00000565294 442 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AC136618.2-201ENST00000575091 400 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AC011471.1-201ENST00000585766 187 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AL160281.1-201ENST00000605307 311 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AC034229.4-201ENST00000607861 441 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AC072039.2-201ENST00000608883 439 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AL138880.2-201ENST00000616214 239 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AL607023.1-201ENST00000620045 248 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 PCMTD1P7-201ENST00000634506 357 ntBASIC2.93□□□□□ -1.94
LHX3Q9UBR4 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.93□□□□□ -1.94
LHX3Q9UBR4 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.92□□□□□ -1.94
LHX3Q9UBR4 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
LHX3Q9UBR4 AP003122.5-201ENST00000527668 3766 ntBASIC2.92□□□□□ -1.94
LHX3Q9UBR4 SDAD1P2-201ENST00000441308 2028 ntBASIC2.92□□□□□ -1.94
LHX3Q9UBR4 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
LHX3Q9UBR4 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.92□□□□□ -1.94
LHX3Q9UBR4 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
LHX3Q9UBR4 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.92□□□□□ -1.94
LHX3Q9UBR4 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
LHX3Q9UBR4 SNORA18.3-201ENST00000384122 132 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms