Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 OR5J1P-201ENST00000313544 939 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 RNU6-157P-201ENST00000383957 107 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 MIR493-201ENST00000385254 89 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 RNU2-43P-201ENST00000410306 190 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 AL008987.1-201ENST00000415528 237 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 AC024082.2-201ENST00000434771 238 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 SNRPEP4-201ENST00000435815 279 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 AL121871.1-201ENST00000443413 436 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 RNA5SP310-201ENST00000459084 116 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 AC103975.1-201ENST00000482506 483 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 AC026801.2-201ENST00000515352 425 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 COX6CP8-201ENST00000522620 226 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 AC105148.1-201ENST00000604961 409 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 AC107952.2-201ENST00000606048 486 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 AL139418.1-201ENST00000613613 177 ntBASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AC009812.4-201ENST00000569134 1805 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 RNU6-777P-201ENST00000364265 104 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 Y_RNA.234-201ENST00000364409 97 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 ANAPC10P1-201ENST00000395991 556 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AL512633.1-201ENST00000399931 655 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AL356057.3-201ENST00000402607 340 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 RN7SKP123-201ENST00000410732 291 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 RNA5SP21-201ENST00000410917 96 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 BX119904.4-201ENST00000424402 301 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AC108860.1-201ENST00000484521 383 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 HMGB1P36-201ENST00000487709 576 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 VN1R104P-201ENST00000505115 1009 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 ARL4AP2-201ENST00000507378 601 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 SNORA70.16-201ENST00000516390 95 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 RNU6-714P-201ENST00000516963 103 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 SNORA31.26-201ENST00000517250 137 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 DUXAP1-201ENST00000556632 463 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 GTF3AP2-201ENST00000557014 266 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AC106782.4-201ENST00000568264 210 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AC138761.3-201ENST00000579993 334 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AC011471.1-201ENST00000585766 187 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AC006504.3-201ENST00000586818 523 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AL137843.1-201ENST00000605078 385 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 AL136981.2-201ENST00000617319 734 ntBASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VPS54Q9P1Q0 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AC233728.2-201ENST00000425348 757 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AL831737.1-201ENST00000441288 271 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 MRPL50P4-201ENST00000446432 475 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 SNORD11.1-201ENST00000459482 85 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 RPL30P9-201ENST00000465586 330 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AC104472.2-201ENST00000469035 601 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AP005205.1-201ENST00000563503 508 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 VN1R82P-201ENST00000601481 356 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AL592221.1-201ENST00000605266 382 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AL160281.1-201ENST00000605307 311 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 ATP1B3P1-201ENST00000605365 821 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AC112220.3-201ENST00000605502 502 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AP002826.1-201ENST00000608835 315 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AC009570.1-201ENST00000609599 745 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 AC002076.2-201ENST00000617362 122 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms