Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU6-639P-201ENST00000384074 107 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 RNA5SP372-201ENST00000390836 115 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 RNU6-550P-201ENST00000391057 101 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 OFD1P1Y-201ENST00000411756 1225 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 BX323014.1-201ENST00000412876 237 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 RPL30P2-201ENST00000414021 291 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 AC009237.10-201ENST00000414112 510 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 AL356095.1-201ENST00000417217 199 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 FABP5P14-201ENST00000437273 393 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 RPS27AP13-201ENST00000498403 237 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 HIGD1AP3-201ENST00000515857 278 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 RNU6-189P-201ENST00000516120 101 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 RNU6-685P-201ENST00000517088 95 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 RNA5SP454-201ENST00000517231 127 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 PTP4A1P6-201ENST00000531034 478 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 AC006116.10-201ENST00000591836 581 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 MIR6867-201ENST00000610636 67 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 TUG1_2.1-201ENST00000614234 87 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AC100778.3-201ENST00000580060 1750 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 DHX9P1-201ENST00000436565 3076 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AC104260.2-201ENST00000623551 3497 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 RNU6-989P-201ENST00000362756 107 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 RNU6-370P-201ENST00000411008 104 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AC005517.2-201ENST00000424673 553 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 RPL21P112-201ENST00000434403 463 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 MTND3P2-201ENST00000438452 342 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AC020550.1-201ENST00000447385 163 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AL162389.1-201ENST00000449233 177 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AC007967.1-201ENST00000455422 1159 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 RN7SKP24-201ENST00000515888 284 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 RNA5SP49-201ENST00000516450 115 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 HMGB1P19-201ENST00000517578 577 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 APOOP3-201ENST00000536787 586 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 MIR3944-201ENST00000581277 108 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AL669831.4-202ENST00000590817 238 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AC016925.2-201ENST00000605108 242 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 MTND5P42-201ENST00000637720 498 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AC139769.1-204ENST00000472297 1931 ntBASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC87Q9NVE4 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AC026523.2-201ENST00000625039 7739 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AC011155.1-201ENST00000316512 456 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 RNU6-254P-201ENST00000363377 107 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 Y_RNA.493-201ENST00000384422 102 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AL360182.1-201ENST00000397433 468 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 THAP12P5-201ENST00000405864 2275 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AL450326.2-201ENST00000421913 1962 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 GPM6BP2-201ENST00000432046 144 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 RPL23AP33-201ENST00000442301 452 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 MTCO3P45-201ENST00000443036 613 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms