Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 RNU6-853P-201ENST00000364306 107 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AC110754.1-201ENST00000399740 601 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 RNA5SP293-201ENST00000410527 113 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 BMS1P22-201ENST00000414726 313 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 UBE2D3P4-201ENST00000441973 436 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 MTCO1P27-201ENST00000448269 226 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 Z82190.1-201ENST00000454534 490 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 RNU6-759P-201ENST00000516740 103 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AC013828.2-201ENST00000532487 235 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AC008088.1-201ENST00000580993 280 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AC079248.2-201ENST00000623779 326 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 AC099063.3-201ENST00000642066 185 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 RNU6-660P-201ENST00000364566 109 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 SNORA70B-201ENST00000384210 135 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 MIR34A-201ENST00000385130 110 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 MIR607-201ENST00000385241 96 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 RNU2-37P-201ENST00000410695 177 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 USP9YP26-201ENST00000421008 661 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 UBE2V1P13-201ENST00000436983 439 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 snoU13.4-201ENST00000458916 104 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 UBL5P3-201ENST00000475112 231 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 RPL31P13-201ENST00000484151 370 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 AC093278.1-201ENST00000494700 600 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 RPL23AP55-201ENST00000498163 452 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 KLHL2P1-201ENST00000508691 521 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 AC093677.1-201ENST00000514414 678 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 RNU6-1095P-201ENST00000516148 108 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 RNU6-714P-201ENST00000516963 103 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 RNU6-1231P-201ENST00000517185 103 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 OR5D17P-201ENST00000531492 978 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 AP004247.1-201ENST00000531556 1289 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 AC234778.2-201ENST00000566241 354 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 MIR4425-201ENST00000580572 84 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 MIR4769-201ENST00000584126 77 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 AC024153.1-201ENST00000603103 365 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 MTCYBP22-201ENST00000603788 447 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 AL590282.1-201ENST00000610379 1136 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 MIR7843-201ENST00000622274 79 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 AC007494.3-201ENST00000624660 743 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 AC092192.1-201ENST00000633154 1018 ntBASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
ZNF541Q9H0D2 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 MIR196B-201ENST00000384852 84 ntBASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 AL360182.1-201ENST00000397433 468 ntBASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 TOMM22P1-201ENST00000418578 312 ntBASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 BEND7P1-201ENST00000422058 457 ntBASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 VDAC1P3-201ENST00000434069 851 ntBASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 HMGB3P11-201ENST00000440127 604 ntBASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 RPL23AP62-201ENST00000463396 453 ntBASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 AC128713.1-201ENST00000471495 306 ntBASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 HMGB1P36-201ENST00000487709 576 ntBASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 AC034222.1-201ENST00000494052 532 ntBASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 AC008413.1-201ENST00000511864 177 ntBASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 OR5G4P-201ENST00000525251 760 ntBASIC3.57□□□□□ -1.84
ZNF541Q9H0D2 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms