Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MIR3913-1-201ENST00000577744 102 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 MIR4528-201ENST00000577763 90 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 MTND1P15-201ENST00000579262 949 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC006566.1-201ENST00000608943 513 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC091304.9-201ENST00000612091 226 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
NKX3-1Q99801 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 AL355810.1-201ENST00000614629 552 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC139792.2-201ENST00000624218 587 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC112200.1-201ENST00000625015 234 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 U6.98-201ENST00000637157 84 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.05□□□□□ -1.92
NKX3-1Q99801 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC009812.4-201ENST00000569134 1805 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 ZNF285B-201ENST00000561698 1767 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
NKX3-1Q99801 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
NKX3-1Q99801 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.04□□□□□ -1.92
NKX3-1Q99801 FRG1CP-201ENST00000358464 769 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 RNA5SP295-201ENST00000362655 121 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 U8.3-201ENST00000363321 132 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 FCF1P10-201ENST00000407590 479 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 CCDC58P2-201ENST00000417131 366 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AL451062.2-201ENST00000427515 271 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 RPS3AP46-201ENST00000448352 682 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 RPS4XP2-201ENST00000458402 793 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AC034236.1-201ENST00000469891 373 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 RPS15AP36-201ENST00000492022 382 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
NKX3-1Q99801 ARL2BPP6-201ENST00000512757 439 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 RNU2-27P-201ENST00000516185 142 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 RN7SKP60-201ENST00000516985 239 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AP002453.2-201ENST00000533503 320 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 AL133153.1-201ENST00000557756 303 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 COX6CP3-201ENST00000580869 223 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 AC067852.3-201ENST00000589177 561 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 CKS1BP3-201ENST00000600888 237 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AC007038.2-201ENST00000608095 740 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AC131902.3-201ENST00000611767 581 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AC100793.4-201ENST00000613683 429 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AL603758.1-201ENST00000618654 241 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AL590240.3-201ENST00000621416 943 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AL360181.4-201ENST00000621752 134 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AC039056.2-201ENST00000622261 511 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AL136313.1-201ENST00000624804 202 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AC019226.1-201ENST00000625666 515 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AL034408.1-202ENST00000636088 415 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 AC244258.1-201ENST00000637553 1071 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
NKX3-1Q99801 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX3-1Q99801 TAB3P1-202ENST00000452645 1634 ntBASIC3.04□□□□□ -1.92
NKX3-1Q99801 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
NKX3-1Q99801 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC005183.1-201ENST00000603687 1979 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC138915.3-201ENST00000562908 1389 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 RNU4-1-201ENST00000363925 141 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 RNY4P34-201ENST00000364779 95 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 OR5H15-201ENST00000383696 930 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 RNU6-1119P-201ENST00000384349 108 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 Y_RNA.559-201ENST00000384686 107 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 U8.11-201ENST00000384699 133 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 U8.12-201ENST00000384701 133 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 RNU6-754P-201ENST00000391166 107 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 RPS3AP36-201ENST00000398190 775 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AL136372.1-201ENST00000403060 228 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AP000567.1-201ENST00000406413 156 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 U3.39-201ENST00000408569 239 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 RN7SKP53-201ENST00000411337 315 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC007390.1-201ENST00000415722 356 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 SPA17P1-201ENST00000416656 452 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC068533.1-201ENST00000418542 415 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AL035423.1-201ENST00000420331 213 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 RPL31P12-201ENST00000422587 358 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 PPP1R11P2-201ENST00000423543 382 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 MTATP6P4-201ENST00000427725 675 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
NKX3-1Q99801 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 TIMM9P1-201ENST00000436122 256 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms