Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MIR7-3-201ENST00000384898 110 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
USP28Q96RU2 AL590004.2-201ENST00000404787 371 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.33□□□□□ -1.88
USP28Q96RU2 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.33□□□□□ -1.88
USP28Q96RU2 YPEL5P1-201ENST00000419731 367 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.33□□□□□ -1.88
USP28Q96RU2 AC006548.1-201ENST00000427470 102 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.33□□□□□ -1.88
USP28Q96RU2 AC010153.1-201ENST00000432862 727 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.33□□□□□ -1.88
USP28Q96RU2 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.33□□□□□ -1.88
USP28Q96RU2 MTND1P29-201ENST00000448112 647 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.33□□□□□ -1.88
USP28Q96RU2 USP9YP10-201ENST00000454868 628 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 TPTE2P5-203ENST00000458118 728 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 RPL7P5-201ENST00000471472 736 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USP28Q96RU2 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.33□□□□□ -1.88
USP28Q96RU2 AL358832.1-201ENST00000497800 389 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 AC093767.1-201ENST00000504523 156 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USP28Q96RU2 AC105914.1-201ENST00000511798 226 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.33□□□□□ -1.88
USP28Q96RU2 RN7SKP272-201ENST00000516988 232 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 AC106038.2-201ENST00000520706 568 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 AC087276.1-201ENST00000529659 480 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.33□□□□□ -1.88
USP28Q96RU2 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.33□□□□□ -1.88
USP28Q96RU2 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC3.33□□□□□ -1.88
USP28Q96RU2 AC012414.6-201ENST00000568241 401 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.33□□□□□ -1.88
USP28Q96RU2 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.33□□□□□ -1.88
USP28Q96RU2 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.33□□□□□ -1.88
USP28Q96RU2 NBR2-204ENST00000587322 63 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.33□□□□□ -1.88
USP28Q96RU2 AC107214.2-201ENST00000608204 634 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 AC068831.7-201ENST00000616954 363 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 AC008443.7-201ENST00000622195 246 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 AC091953.5-201ENST00000622919 233 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 CR381572.1-201ENST00000625098 102 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.33□□□□□ -1.88
USP28Q96RU2 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.33□□□□□ -1.88
USP28Q96RU2 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.33□□□□□ -1.88
USP28Q96RU2 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
USP28Q96RU2 PABPC1P9-201ENST00000426076 1612 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.33□□□□□ -1.88
USP28Q96RU2 MAPK10-362ENST00000641864 4484 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP28Q96RU2 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USP28Q96RU2 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
USP28Q96RU2 RNA5SP374-201ENST00000362939 125 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 RNU6-289P-201ENST00000364093 107 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 RNA5SP72-201ENST00000364442 117 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 SNORA71.1-201ENST00000364523 117 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 SNORD82-201ENST00000365530 70 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 RNU6-952P-201ENST00000391164 108 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 AL024474.1-201ENST00000404655 591 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.32□□□□□ -1.88
USP28Q96RU2 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USP28Q96RU2 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.32□□□□□ -1.88
USP28Q96RU2 AC092017.2-201ENST00000427600 362 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 RPL21P40-201ENST00000428586 483 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.32□□□□□ -1.88
USP28Q96RU2 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.32□□□□□ -1.88
USP28Q96RU2 AC127537.2-201ENST00000439258 465 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.32□□□□□ -1.88
USP28Q96RU2 TRIM60P18-201ENST00000441518 828 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 RPL21P8-201ENST00000465083 535 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USP28Q96RU2 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USP28Q96RU2 AC009812.2-201ENST00000517657 457 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
USP28Q96RU2 AC239860.2-201ENST00000525886 270 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USP28Q96RU2 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.32□□□□□ -1.88
USP28Q96RU2 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.32□□□□□ -1.88
USP28Q96RU2 OR6C7P-201ENST00000547875 934 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 ACTR3BP3-201ENST00000565577 979 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 MTCYBP33-201ENST00000575007 1130 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 U73023.1-201ENST00000603134 700 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.32□□□□□ -1.88
USP28Q96RU2 AC084782.3-201ENST00000612282 578 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 AL110115.1-201ENST00000614396 364 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.32□□□□□ -1.88
USP28Q96RU2 AC084035.1-201ENST00000634543 607 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 ASNSP3-201ENST00000451989 1306 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.32□□□□□ -1.88
USP28Q96RU2 AL022578.1-201ENST00000439330 1433 ntBASIC3.32□□□□□ -1.88
USP28Q96RU2 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.32□□□□□ -1.88
USP28Q96RU2 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.32□□□□□ -1.88
USP28Q96RU2 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.32□□□□□ -1.88
USP28Q96RU2 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.32□□□□□ -1.88
USP28Q96RU2 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
USP28Q96RU2 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
USP28Q96RU2 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP28Q96RU2 AC093908.1-201ENST00000623125 8092 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 MTCO1P23-201ENST00000415223 1526 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms