Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 OR4H12P-201ENST00000556269 907 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 MIR1254-2-201ENST00000579553 63 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AC105129.3-201ENST00000605455 485 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AC107294.3-201ENST00000609211 526 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AC243312.2-201ENST00000623340 601 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AC110801.1-201ENST00000623590 212 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
NUP54Q7Z3B4 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.28□□□□□ -1.89
NUP54Q7Z3B4 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 RNU5F-7P-201ENST00000363696 115 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 MIR449B-201ENST00000384995 97 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 MIR218-2-201ENST00000385006 110 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AL021407.1-201ENST00000404531 386 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 RNU6-516P-201ENST00000411381 104 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 NDUFB4P7-201ENST00000423198 363 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 RPL35AP22-201ENST00000436855 335 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 PDSS1P2-201ENST00000449397 678 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 SNRPGP6-201ENST00000451124 220 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 RPS3AP50-201ENST00000487064 803 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 OR5BM1P-201ENST00000512021 366 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 PHBP14-201ENST00000512887 367 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 HMGN1P28-201ENST00000521340 364 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 MTND4LP18-201ENST00000526864 291 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 HIGD1AP1-201ENST00000550979 275 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AC125611.2-201ENST00000551907 647 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AC083760.1-201ENST00000589621 670 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AL031775.1-201ENST00000607014 887 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 RNVU1-4-201ENST00000612985 164 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AC012150.2-201ENST00000621300 544 ntBASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.27□□□□□ -1.89
NUP54Q7Z3B4 AC068647.1-201ENST00000489539 2265 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 RNU5E-8P-201ENST00000363502 116 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 SNORA26.8-201ENST00000391306 124 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 MTCYBP36-201ENST00000404146 440 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 RPL17P12-201ENST00000413391 526 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 RPS29P4-201ENST00000414733 161 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 NPM1P11-201ENST00000417106 855 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 PPP1R11P2-201ENST00000423543 382 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 RPL7L1P10-201ENST00000427790 463 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 AC091286.1-201ENST00000431233 461 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 AC092573.2-201ENST00000434546 243 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 RPL21P23-201ENST00000446654 460 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 AC010468.1-201ENST00000461022 817 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 AP002884.2-201ENST00000471647 395 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 AP000797.1-201ENST00000478870 387 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 RPL23AP41-201ENST00000484754 458 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 AC110768.1-201ENST00000509222 400 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 RNU6-798P-201ENST00000516912 103 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 RN7SKP60-201ENST00000516985 239 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 AC025881.1-201ENST00000518851 512 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 CASP1P1-201ENST00000526345 212 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 AC103843.2-201ENST00000530523 682 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 ACTR3BP3-201ENST00000565577 979 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 HMGB1P6-201ENST00000569046 646 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 RPL23AP84-201ENST00000571193 464 ntBASIC3.26□□□□□ -1.89
NUP54Q7Z3B4 MIR4425-201ENST00000580572 84 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms