Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 SNORA6-201ENST00000384033 151 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC1.27□□□□□ -2.21
USF3Q68DE3 HMGN2P21-201ENST00000447764 270 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 RPS23P3-201ENST00000470993 430 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.27□□□□□ -2.21
USF3Q68DE3 AC090425.2-201ENST00000608818 501 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 AC022709.1-201ENST00000615967 87 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.26□□□□□ -2.21
USF3Q68DE3 AL445183.3-201ENST00000414168 502 ntBASIC1.26□□□□□ -2.21
USF3Q68DE3 PAICSP7-201ENST00000419829 962 ntBASIC1.26□□□□□ -2.21
USF3Q68DE3 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC1.26□□□□□ -2.21
USF3Q68DE3 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.26□□□□□ -2.21
USF3Q68DE3 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.26□□□□□ -2.21
USF3Q68DE3 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.26□□□□□ -2.21
USF3Q68DE3 AC034222.1-201ENST00000494052 532 ntBASIC1.26□□□□□ -2.21
USF3Q68DE3 RNU4-60P-201ENST00000517239 135 ntBASIC1.26□□□□□ -2.21
USF3Q68DE3 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC1.26□□□□□ -2.21
USF3Q68DE3 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.26□□□□□ -2.21
USF3Q68DE3 AC006329.2-201ENST00000611491 394 ntBASIC1.26□□□□□ -2.21
USF3Q68DE3 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.26□□□□□ -2.21
USF3Q68DE3 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
USF3Q68DE3 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
USF3Q68DE3 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
USF3Q68DE3 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
USF3Q68DE3 RNY1-201ENST00000364228 113 ntBASIC1.25□□□□□ -2.21
USF3Q68DE3 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC1.25□□□□□ -2.21
USF3Q68DE3 MTND4LP16-201ENST00000440828 295 ntBASIC1.25□□□□□ -2.21
USF3Q68DE3 RPL21P104-201ENST00000464143 478 ntBASIC1.25□□□□□ -2.21
USF3Q68DE3 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC1.25□□□□□ -2.21
USF3Q68DE3 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.25□□□□□ -2.21
USF3Q68DE3 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC1.25□□□□□ -2.21
USF3Q68DE3 SEPT7P9-203ENST00000604116 343 ntBASIC1.25□□□□□ -2.21
USF3Q68DE3 AC006338.1-201ENST00000618453 749 ntBASIC1.25□□□□□ -2.21
USF3Q68DE3 AC116563.2-201ENST00000624751 535 ntBASIC1.25□□□□□ -2.21
USF3Q68DE3 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
USF3Q68DE3 AP002907.1-201ENST00000606361 1430 ntBASIC1.25□□□□□ -2.21
USF3Q68DE3 RNA5SP27-201ENST00000363839 119 ntBASIC1.25□□□□□ -2.21
USF3Q68DE3 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
USF3Q68DE3 AC034244.1-201ENST00000507687 207 ntBASIC1.25□□□□□ -2.21
USF3Q68DE3 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.25□□□□□ -2.21
USF3Q68DE3 AC135279.1-201ENST00000543493 504 ntBASIC1.25□□□□□ -2.21
USF3Q68DE3 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC1.25□□□□□ -2.21
USF3Q68DE3 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.25□□□□□ -2.21
USF3Q68DE3 AC080078.3-201ENST00000605407 463 ntBASIC1.25□□□□□ -2.21
USF3Q68DE3 MTND5P10-201ENST00000603719 1809 ntBASIC1.25□□□□□ -2.21
USF3Q68DE3 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
USF3Q68DE3 AC073055.1-201ENST00000456901 1621 ntBASIC1.25□□□□□ -2.21
USF3Q68DE3 RNA5SP325-201ENST00000363756 130 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 AL030996.1-201ENST00000411430 235 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.24□□□□□ -2.21
USF3Q68DE3 MTND4LP21-201ENST00000415303 295 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 HMGB1P45-201ENST00000435986 653 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.24□□□□□ -2.21
USF3Q68DE3 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.24□□□□□ -2.21
USF3Q68DE3 COX6CP14-201ENST00000469580 174 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC1.24□□□□□ -2.21
USF3Q68DE3 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 RNA5SP61-201ENST00000516453 100 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 RNA5SP468-201ENST00000516782 93 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 OR6C73P-201ENST00000546432 358 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.24□□□□□ -2.21
USF3Q68DE3 AC023813.2-201ENST00000564321 469 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.24□□□□□ -2.21
USF3Q68DE3 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC1.24□□□□□ -2.21
USF3Q68DE3 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.24□□□□□ -2.21
USF3Q68DE3 AC103710.2-202ENST00000641454 2853 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 RNU6-799P-201ENST00000363567 107 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 RNA5SP363-201ENST00000365072 115 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 AC096533.1-201ENST00000411645 353 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 AC074117.2-201ENST00000417130 397 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC1.24□□□□□ -2.21
USF3Q68DE3 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC1.24□□□□□ -2.21
USF3Q68DE3 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.24□□□□□ -2.21
USF3Q68DE3 AC022493.1-201ENST00000492984 337 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.24□□□□□ -2.21
USF3Q68DE3 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC1.24□□□□□ -2.21
USF3Q68DE3 MTCO1P47-201ENST00000523889 1271 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 AP002748.2-201ENST00000528671 348 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 MIR3690-201ENST00000580266 75 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC1.24□□□□□ -2.21
USF3Q68DE3 MIR6734-201ENST00000621166 68 ntBASIC1.24□□□□□ -2.21
USF3Q68DE3 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC1.23□□□□□ -2.21
USF3Q68DE3 RNU4-51P-201ENST00000364206 140 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 RPL23AP29-201ENST00000397284 453 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 SNRPEP2-201ENST00000397592 279 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 RPL23AP47-201ENST00000408017 460 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.23□□□□□ -2.21
USF3Q68DE3 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC1.23□□□□□ -2.21
USF3Q68DE3 RPS6P14-201ENST00000425165 719 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC1.23□□□□□ -2.21
USF3Q68DE3 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC1.23□□□□□ -2.21
USF3Q68DE3 HMGB3P3-201ENST00000510526 400 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC1.23□□□□□ -2.21
USF3Q68DE3 AP005435.4-201ENST00000529514 284 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.23□□□□□ -2.21
USF3Q68DE3 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.23□□□□□ -2.21
USF3Q68DE3 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.23□□□□□ -2.21
USF3Q68DE3 AL031601.2-202ENST00000622650 282 ntBASIC1.23□□□□□ -2.21
USF3Q68DE3 MIR3199-2-201ENST00000636243 86 ntBASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 148.3 ms