Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC1.53□□□□□ -2.16
FOXA3P55318 AC025165.5-201ENST00000602802 578 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 AC120053.1-201ENST00000607706 736 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 AL392048.1-201ENST00000613946 534 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
FOXA3P55318 AC010329.5-201ENST00000623497 2174 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 CTSLP2-204ENST00000629029 392 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.52□□□□□ -2.17
FOXA3P55318 MTND4P27-201ENST00000450813 1354 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
FOXA3P55318 ENSAP3-201ENST00000312710 333 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 AC062016.1-201ENST00000355719 319 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 MIR208A-201ENST00000362287 71 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
FOXA3P55318 RNU6-220P-201ENST00000390919 107 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 RPS7P9-201ENST00000414704 586 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA3P55318 TRBV24OR9-2-201ENST00000416632 435 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA3P55318 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.52□□□□□ -2.17
FOXA3P55318 ZNF90P2-204ENST00000419323 1075 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 PAICSP7-201ENST00000419829 962 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA3P55318 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC1.52□□□□□ -2.17
FOXA3P55318 EIF4EP4-201ENST00000424916 578 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 AC027124.2-201ENST00000428249 105 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA3P55318 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC1.52□□□□□ -2.17
FOXA3P55318 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.52□□□□□ -2.17
FOXA3P55318 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA3P55318 RPS3AP12-201ENST00000443616 753 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.52□□□□□ -2.17
FOXA3P55318 EEF1B2P7-201ENST00000451177 676 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC1.52□□□□□ -2.17
FOXA3P55318 RPS3AP14-201ENST00000483907 780 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
FOXA3P55318 AC097462.2-201ENST00000504623 481 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 RNU6-27P-201ENST00000516146 107 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 SNORA48.10-201ENST00000516965 160 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC1.52□□□□□ -2.17
FOXA3P55318 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.52□□□□□ -2.17
FOXA3P55318 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.52□□□□□ -2.17
FOXA3P55318 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC1.52□□□□□ -2.17
FOXA3P55318 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC1.52□□□□□ -2.17
FOXA3P55318 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA3P55318 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA3P55318 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA3P55318 AC007229.1-201ENST00000590455 412 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 MIR7106-201ENST00000612419 65 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 AC135507.2-201ENST00000612443 309 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 AL590099.1-201ENST00000615276 138 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA3P55318 AC006386.2-201ENST00000624491 75 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 AC012005.1-201ENST00000624575 75 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 AP003400.6-201ENST00000624698 740 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC1.52□□□□□ -2.17
FOXA3P55318 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA3P55318 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA3P55318 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
FOXA3P55318 AC080128.1-201ENST00000474389 1917 ntBASIC1.52□□□□□ -2.17
FOXA3P55318 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.51□□□□□ -2.17
FOXA3P55318 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
FOXA3P55318 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
FOXA3P55318 MIR676-201ENST00000390702 67 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 GSTA9P-201ENST00000406231 611 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 RNA5SP184-201ENST00000411071 108 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 ZNF92P1Y-201ENST00000415010 1191 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.51□□□□□ -2.17
FOXA3P55318 AC233981.1-201ENST00000423224 461 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 HMGN2P19-201ENST00000425149 265 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 AC236972.1-201ENST00000433225 199 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC1.51□□□□□ -2.17
FOXA3P55318 ANKRD30BP3-201ENST00000444850 1070 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.51□□□□□ -2.17
FOXA3P55318 AL109933.2-201ENST00000452651 260 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA3P55318 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA3P55318 KLF3P2-201ENST00000465138 268 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 AC055731.1-201ENST00000474387 401 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 AC072039.1-201ENST00000477611 581 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 RN7SL432P-201ENST00000484057 298 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 AC147055.4-201ENST00000504399 745 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA3P55318 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC1.51□□□□□ -2.17
FOXA3P55318 AC006499.2-201ENST00000513470 337 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 RNU6-889P-201ENST00000517189 103 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC1.51□□□□□ -2.17
FOXA3P55318 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
FOXA3P55318 AC009268.1-201ENST00000561352 1203 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 AL049838.1-201ENST00000563647 981 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 AC022662.1-201ENST00000580252 331 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 AC013444.2-201ENST00000603317 787 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 AC093838.1-201ENST00000613014 469 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
FOXA3P55318 AC104307.1-201ENST00000616142 196 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 AP001002.2-201ENST00000625137 386 ntBASIC1.51□□□□□ -2.17
FOXA3P55318 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.51□□□□□ -2.17
FOXA3P55318 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
FOXA3P55318 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
FOXA3P55318 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms