Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RPL23AP29-201ENST00000397284 453 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 RNA5SP274-201ENST00000410484 108 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 TPMTP3-201ENST00000411928 735 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.04□□□□□ -1.92
PTPN4P29074 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.04□□□□□ -1.92
PTPN4P29074 AC234781.2-201ENST00000426370 994 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 AL356867.1-201ENST00000429623 299 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 AC024082.2-201ENST00000434771 238 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.04□□□□□ -1.92
PTPN4P29074 AL831737.1-201ENST00000441288 271 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 MTND3P1-201ENST00000441336 220 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.04□□□□□ -1.92
PTPN4P29074 GSTA11P-201ENST00000452866 669 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 AL049714.1-201ENST00000466686 347 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.04□□□□□ -1.92
PTPN4P29074 RN7SL633P-201ENST00000488974 297 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.04□□□□□ -1.92
PTPN4P29074 AC034244.1-201ENST00000507687 207 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 AC006445.2-201ENST00000510061 472 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 RNU6-150P-201ENST00000516237 95 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 RNU5A-4P-201ENST00000516588 111 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC3.04□□□□□ -1.92
PTPN4P29074 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.04□□□□□ -1.92
PTPN4P29074 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.04□□□□□ -1.92
PTPN4P29074 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.04□□□□□ -1.92
PTPN4P29074 AC087465.1-201ENST00000560574 245 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.04□□□□□ -1.92
PTPN4P29074 MTATP6P24-201ENST00000576835 677 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 MIR3609-201ENST00000582661 80 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 RNU6-88P-201ENST00000606801 100 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.04□□□□□ -1.92
PTPN4P29074 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.04□□□□□ -1.92
PTPN4P29074 AC079395.3-201ENST00000615161 484 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 AC018692.3-201ENST00000623929 123 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 AL159972.1-201ENST00000625150 448 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.04□□□□□ -1.92
PTPN4P29074 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.04□□□□□ -1.92
PTPN4P29074 SDAD1P2-201ENST00000441308 2028 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 Y_RNA.234-201ENST00000364409 97 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 RNU1-140P-201ENST00000365040 165 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 RNU6-157P-201ENST00000383957 107 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 MIR135A2-201ENST00000384854 100 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
PTPN4P29074 RNU6-952P-201ENST00000391164 108 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AL031121.1-201ENST00000406553 254 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 RNU6-757P-201ENST00000410334 100 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AC083875.1-201ENST00000419509 405 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AL139281.1-201ENST00000422120 335 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.03□□□□□ -1.92
PTPN4P29074 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC3.03□□□□□ -1.92
PTPN4P29074 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.03□□□□□ -1.92
PTPN4P29074 AL590383.1-201ENST00000428602 75 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 RPS25P9-201ENST00000435591 252 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.03□□□□□ -1.92
PTPN4P29074 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 COX6CP2-201ENST00000444980 225 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 NANOGNBP1-201ENST00000448444 480 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 SNORD121B-201ENST00000458838 81 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 SETP11-201ENST00000473027 690 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AC026801.2-201ENST00000515352 425 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 RN7SKP287-201ENST00000516546 266 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 HMGN1P28-201ENST00000521340 364 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 OR5G4P-201ENST00000525251 760 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.03□□□□□ -1.92
PTPN4P29074 AP002404.1-201ENST00000532005 451 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PTPN4P29074 EIF4BP1-201ENST00000554881 351 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.03□□□□□ -1.92
PTPN4P29074 DUXAP1-201ENST00000556632 463 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.03□□□□□ -1.92
PTPN4P29074 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.03□□□□□ -1.92
PTPN4P29074 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.03□□□□□ -1.92
PTPN4P29074 LARP7P3-201ENST00000579888 337 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.03□□□□□ -1.92
PTPN4P29074 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.03□□□□□ -1.92
PTPN4P29074 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.03□□□□□ -1.92
PTPN4P29074 RPL23AP78-201ENST00000599928 470 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AC006539.2-201ENST00000601729 572 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 DUXAP4-201ENST00000603046 613 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AC093424.1-201ENST00000604999 338 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AL158042.1-201ENST00000605338 460 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AC112220.3-201ENST00000605502 502 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AP000254.1-201ENST00000609934 520 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AC063944.3-201ENST00000609969 533 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AC107871.2-201ENST00000612894 502 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 AL590099.1-201ENST00000615276 138 ntBASIC3.03□□□□□ -1.92
PTPN4P29074 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.03□□□□□ -1.92
PTPN4P29074 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.03□□□□□ -1.92
PTPN4P29074 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.03□□□□□ -1.92
PTPN4P29074 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.93
PTPN4P29074 AC099654.7-201ENST00000635788 2127 ntBASIC3.02□□□□□ -1.93
PTPN4P29074 AC092447.10-201ENST00000620607 1652 ntBASIC3.02□□□□□ -1.93
PTPN4P29074 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
PTPN4P29074 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
PTPN4P29074 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
PTPN4P29074 SNORD113-6-201ENST00000363345 75 ntBASIC3.02□□□□□ -1.93
PTPN4P29074 RNU6-97P-201ENST00000363387 104 ntBASIC3.02□□□□□ -1.93
PTPN4P29074 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
PTPN4P29074 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
PTPN4P29074 RNA5SP252-201ENST00000391131 119 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 150.5 ms