Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL662874.1-201ENST00000426065 230 ntBASIC5.18□□□□□ -1.58
MSX1P28360 AC087650.1-201ENST00000431445 468 ntBASIC5.18□□□□□ -1.58
MSX1P28360 TMEM183AP1-205ENST00000432739 290 ntBASIC5.18□□□□□ -1.58
MSX1P28360 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC5.18□□□□□ -1.58
MSX1P28360 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC5.18□□□□□ -1.58
MSX1P28360 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC5.18□□□□□ -1.58
MSX1P28360 SNORD125-201ENST00000459538 96 ntBASIC5.18□□□□□ -1.58
MSX1P28360 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC5.18□□□□□ -1.58
MSX1P28360 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.18□□□□□ -1.58
MSX1P28360 RNU6-496P-201ENST00000516145 99 ntBASIC5.18□□□□□ -1.58
MSX1P28360 SNORA43.3-201ENST00000517240 103 ntBASIC5.18□□□□□ -1.58
MSX1P28360 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.18□□□□□ -1.58
MSX1P28360 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.18□□□□□ -1.58
MSX1P28360 AL359219.2-201ENST00000555184 348 ntBASIC5.18□□□□□ -1.58
MSX1P28360 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.18□□□□□ -1.58
MSX1P28360 MIR4311-201ENST00000580794 100 ntBASIC5.18□□□□□ -1.58
MSX1P28360 AC008814.1-201ENST00000603797 406 ntBASIC5.18□□□□□ -1.58
MSX1P28360 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX1P28360 AL596275.2-206ENST00000641957 626 ntBASIC5.18□□□□□ -1.58
MSX1P28360 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
MSX1P28360 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX1P28360 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
MSX1P28360 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSX1P28360 AC009962.1-201ENST00000567327 3813 ntBASIC5.18□□□□□ -1.58
MSX1P28360 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX1P28360 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
MSX1P28360 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
MSX1P28360 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSX1P28360 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSX1P28360 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX1P28360 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX1P28360 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
MSX1P28360 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.17□□□□□ -1.58
MSX1P28360 AC090740.1-201ENST00000623193 2262 ntBASIC5.17□□□□□ -1.58
MSX1P28360 AC100778.3-201ENST00000580060 1750 ntBASIC5.17□□□□□ -1.58
MSX1P28360 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.17□□□□□ -1.58
MSX1P28360 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX1P28360 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.17□□□□□ -1.58
MSX1P28360 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.17□□□□□ -1.58
MSX1P28360 SNORD50.1-201ENST00000362987 71 ntBASIC5.17□□□□□ -1.58
MSX1P28360 RNU1-19P-201ENST00000363306 165 ntBASIC5.17□□□□□ -1.58
MSX1P28360 RNY4P28-201ENST00000365281 93 ntBASIC5.17□□□□□ -1.58
MSX1P28360 RNU6-1027P-201ENST00000383998 107 ntBASIC5.17□□□□□ -1.58
MSX1P28360 AL079342.1-201ENST00000401460 267 ntBASIC5.17□□□□□ -1.58
MSX1P28360 RNU4-34P-201ENST00000410431 124 ntBASIC5.17□□□□□ -1.58
MSX1P28360 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.17□□□□□ -1.58
MSX1P28360 AL451062.2-201ENST00000427515 271 ntBASIC5.17□□□□□ -1.58
MSX1P28360 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX1P28360 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC5.17□□□□□ -1.58
MSX1P28360 RPL21P104-201ENST00000464143 478 ntBASIC5.17□□□□□ -1.58
MSX1P28360 RPS23P6-201ENST00000466136 431 ntBASIC5.17□□□□□ -1.58
MSX1P28360 COPS8P2-201ENST00000473228 627 ntBASIC5.17□□□□□ -1.58
MSX1P28360 AC012158.1-204ENST00000483430 465 ntBASIC5.17□□□□□ -1.58
MSX1P28360 AC022493.1-201ENST00000492984 337 ntBASIC5.17□□□□□ -1.58
MSX1P28360 SUMO2P6-201ENST00000505273 288 ntBASIC5.17□□□□□ -1.58
MSX1P28360 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX1P28360 MIR2355-201ENST00000517199 87 ntBASIC5.17□□□□□ -1.58
MSX1P28360 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC5.17□□□□□ -1.58
MSX1P28360 AL049872.1-201ENST00000556323 322 ntBASIC5.17□□□□□ -1.58
MSX1P28360 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.17□□□□□ -1.58
MSX1P28360 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX1P28360 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.17□□□□□ -1.58
MSX1P28360 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.17□□□□□ -1.58
MSX1P28360 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSX1P28360 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX1P28360 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.17□□□□□ -1.58
MSX1P28360 IMMP1LP3-201ENST00000604197 224 ntBASIC5.17□□□□□ -1.58
MSX1P28360 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.17□□□□□ -1.58
MSX1P28360 AC138965.3-201ENST00000623875 498 ntBASIC5.17□□□□□ -1.58
MSX1P28360 MIR4496-201ENST00000635896 61 ntBASIC5.17□□□□□ -1.58
MSX1P28360 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX1P28360 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.17□□□□□ -1.58
MSX1P28360 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX1P28360 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX1P28360 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
MSX1P28360 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSX1P28360 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX1P28360 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSX1P28360 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX1P28360 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX1P28360 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.17□□□□□ -1.58
MSX1P28360 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX1P28360 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX1P28360 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX1P28360 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSX1P28360 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX1P28360 AL391684.1-202ENST00000641293 1636 ntBASIC5.16□□□□□ -1.58
MSX1P28360 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX1P28360 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX1P28360 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSX1P28360 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX1P28360 RNA5SP52-201ENST00000362448 134 ntBASIC5.16□□□□□ -1.58
MSX1P28360 RNU6-290P-201ENST00000365212 101 ntBASIC5.16□□□□□ -1.58
MSX1P28360 AL033519.2-201ENST00000403958 392 ntBASIC5.16□□□□□ -1.58
MSX1P28360 SPTLC1P2-201ENST00000407089 121 ntBASIC5.16□□□□□ -1.58
MSX1P28360 MIR1250-201ENST00000408098 113 ntBASIC5.16□□□□□ -1.58
MSX1P28360 RNU2-20P-201ENST00000410425 191 ntBASIC5.16□□□□□ -1.58
MSX1P28360 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.16□□□□□ -1.58
MSX1P28360 AC093655.2-201ENST00000425735 631 ntBASIC5.16□□□□□ -1.58
MSX1P28360 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms