Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC140725.3-201ENST00000616193 880 ntBASIC2.79□□□□□ -1.96
SDC1P18827 AL355493.4-201ENST00000618530 292 ntBASIC2.79□□□□□ -1.96
SDC1P18827 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.79□□□□□ -1.96
SDC1P18827 OR8B1P-202ENST00000641132 1178 ntBASIC2.79□□□□□ -1.96
SDC1P18827 AC110774.1-201ENST00000623567 2018 ntBASIC2.79□□□□□ -1.96
SDC1P18827 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.79□□□□□ -1.96
SDC1P18827 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.78□□□□□ -1.96
SDC1P18827 MTND4P16-201ENST00000466108 1367 ntBASIC2.78□□□□□ -1.96
SDC1P18827 FAM35CP-201ENST00000554755 2470 ntBASIC2.78□□□□□ -1.96
SDC1P18827 RNU1-35P-201ENST00000362782 153 ntBASIC2.78□□□□□ -1.96
SDC1P18827 RNU5E-8P-201ENST00000363502 116 ntBASIC2.78□□□□□ -1.96
SDC1P18827 SNORA71.1-201ENST00000364523 117 ntBASIC2.78□□□□□ -1.96
SDC1P18827 Y_RNA.302-201ENST00000364997 102 ntBASIC2.78□□□□□ -1.96
SDC1P18827 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.78□□□□□ -1.96
SDC1P18827 RNU6-76P-201ENST00000384060 104 ntBASIC2.78□□□□□ -1.96
SDC1P18827 RNU6-253P-201ENST00000384730 105 ntBASIC2.78□□□□□ -1.96
SDC1P18827 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
SDC1P18827 AL590084.2-201ENST00000401481 382 ntBASIC2.78□□□□□ -1.96
SDC1P18827 RAP1BP1-201ENST00000412709 553 ntBASIC2.78□□□□□ -1.96
SDC1P18827 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC2.78□□□□□ -1.96
SDC1P18827 PPP1R11P2-201ENST00000423543 382 ntBASIC2.78□□□□□ -1.96
SDC1P18827 SETP8-201ENST00000435341 628 ntBASIC2.78□□□□□ -1.96
SDC1P18827 UBE2FP3-201ENST00000436366 524 ntBASIC2.78□□□□□ -1.96
SDC1P18827 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.78□□□□□ -1.96
SDC1P18827 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.78□□□□□ -1.96
SDC1P18827 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.78□□□□□ -1.96
SDC1P18827 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.78□□□□□ -1.96
SDC1P18827 RN7SL807P-201ENST00000470923 297 ntBASIC2.78□□□□□ -1.96
SDC1P18827 RPS3AP43-201ENST00000479743 781 ntBASIC2.78□□□□□ -1.96
SDC1P18827 OR2A20P-203ENST00000498397 1268 ntBASIC2.78□□□□□ -1.96
SDC1P18827 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.78□□□□□ -1.96
SDC1P18827 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.78□□□□□ -1.96
SDC1P18827 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC2.78□□□□□ -1.96
SDC1P18827 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
SDC1P18827 LRRC34P1-201ENST00000542742 915 ntBASIC2.78□□□□□ -1.96
SDC1P18827 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.78□□□□□ -1.96
SDC1P18827 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC2.78□□□□□ -1.96
SDC1P18827 ELOCP32-201ENST00000548625 324 ntBASIC2.78□□□□□ -1.96
SDC1P18827 AP005205.1-201ENST00000563503 508 ntBASIC2.78□□□□□ -1.96
SDC1P18827 ANKRD36BP2-206ENST00000575193 1245 ntBASIC2.78□□□□□ -1.96
SDC1P18827 ISCA1P3-201ENST00000577104 373 ntBASIC2.78□□□□□ -1.96
SDC1P18827 MIR4429-201ENST00000580105 73 ntBASIC2.78□□□□□ -1.96
SDC1P18827 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.78□□□□□ -1.96
SDC1P18827 MIR544B-201ENST00000582372 78 ntBASIC2.78□□□□□ -1.96
SDC1P18827 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.78□□□□□ -1.96
SDC1P18827 AL353778.1-201ENST00000603149 408 ntBASIC2.78□□□□□ -1.96
SDC1P18827 AP000811.1-201ENST00000603803 651 ntBASIC2.78□□□□□ -1.96
SDC1P18827 BCRP9-201ENST00000605312 388 ntBASIC2.78□□□□□ -1.96
SDC1P18827 AC004067.1-201ENST00000608733 700 ntBASIC2.78□□□□□ -1.96
SDC1P18827 Z99129.2-201ENST00000619967 314 ntBASIC2.78□□□□□ -1.96
SDC1P18827 AL031667.3-201ENST00000620124 655 ntBASIC2.78□□□□□ -1.96
SDC1P18827 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.78□□□□□ -1.96
SDC1P18827 LRRC77P-213ENST00000637727 880 ntBASIC2.78□□□□□ -1.96
SDC1P18827 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.78□□□□□ -1.96
SDC1P18827 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.78□□□□□ -1.96
SDC1P18827 AC108206.1-201ENST00000570186 4159 ntBASIC2.78□□□□□ -1.97
SDC1P18827 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.77□□□□□ -1.97
SDC1P18827 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.77□□□□□ -1.97
SDC1P18827 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.77□□□□□ -1.97
SDC1P18827 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.77□□□□□ -1.97
SDC1P18827 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.77□□□□□ -1.97
SDC1P18827 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.77□□□□□ -1.97
SDC1P18827 SNORA9.2-201ENST00000365361 133 ntBASIC2.77□□□□□ -1.97
SDC1P18827 MIR181A2-201ENST00000384863 110 ntBASIC2.77□□□□□ -1.97
SDC1P18827 MIR670-201ENST00000390142 98 ntBASIC2.77□□□□□ -1.97
SDC1P18827 RPS3AP26-201ENST00000398259 784 ntBASIC2.77□□□□□ -1.97
SDC1P18827 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.77□□□□□ -1.97
SDC1P18827 AC011233.1-201ENST00000422812 283 ntBASIC2.77□□□□□ -1.97
SDC1P18827 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.77□□□□□ -1.97
SDC1P18827 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.77□□□□□ -1.97
SDC1P18827 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC2.77□□□□□ -1.97
SDC1P18827 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.77□□□□□ -1.97
SDC1P18827 AL359385.1-201ENST00000456509 365 ntBASIC2.77□□□□□ -1.97
SDC1P18827 AC034222.1-201ENST00000494052 532 ntBASIC2.77□□□□□ -1.97
SDC1P18827 AL358832.1-201ENST00000497800 389 ntBASIC2.77□□□□□ -1.97
SDC1P18827 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.77□□□□□ -1.97
SDC1P18827 AC022447.3-201ENST00000506865 495 ntBASIC2.77□□□□□ -1.97
SDC1P18827 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.77□□□□□ -1.97
SDC1P18827 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC2.77□□□□□ -1.97
SDC1P18827 MTND5P4-201ENST00000514978 288 ntBASIC2.77□□□□□ -1.97
SDC1P18827 RNU6-1129P-201ENST00000515964 104 ntBASIC2.77□□□□□ -1.97
SDC1P18827 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.77□□□□□ -1.97
SDC1P18827 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC2.77□□□□□ -1.97
SDC1P18827 PSMA2P1-201ENST00000526365 646 ntBASIC2.77□□□□□ -1.97
SDC1P18827 AC022690.1-201ENST00000526681 550 ntBASIC2.77□□□□□ -1.97
SDC1P18827 AC013828.2-201ENST00000532487 235 ntBASIC2.77□□□□□ -1.97
SDC1P18827 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.77□□□□□ -1.97
SDC1P18827 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.77□□□□□ -1.97
SDC1P18827 ZNF321P-202ENST00000550843 495 ntBASIC2.77□□□□□ -1.97
SDC1P18827 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
SDC1P18827 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.77□□□□□ -1.97
SDC1P18827 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.77□□□□□ -1.97
SDC1P18827 BNIP3P23-201ENST00000599655 511 ntBASIC2.77□□□□□ -1.97
SDC1P18827 YPEL5P2-201ENST00000605553 359 ntBASIC2.77□□□□□ -1.97
SDC1P18827 AP002826.1-201ENST00000608835 315 ntBASIC2.77□□□□□ -1.97
SDC1P18827 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC2.77□□□□□ -1.97
SDC1P18827 AC084757.4-201ENST00000616350 526 ntBASIC2.77□□□□□ -1.97
SDC1P18827 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.77□□□□□ -1.97
SDC1P18827 AC010338.1-201ENST00000621823 717 ntBASIC2.77□□□□□ -1.97
SDC1P18827 AC091953.5-201ENST00000622919 233 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms