Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 RNU6-1120P-201ENST00000362988 108 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 RNA5SP447-201ENST00000363749 119 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
DDX56Q9NY93 RNU6-190P-201ENST00000384154 102 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 SNORA37-201ENST00000384504 129 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 RPS4XP9-201ENST00000405151 780 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 ELOCP19-201ENST00000411919 318 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
DDX56Q9NY93 MTATP6P18-201ENST00000417994 673 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 TIMM9P3-201ENST00000428659 274 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 RPL23AP30-201ENST00000432419 501 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 SETP5-201ENST00000437270 562 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 AL451074.3-201ENST00000437709 472 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 PSPHP1-201ENST00000450062 261 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 snoU13.1-201ENST00000459157 104 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 RPL9P6-201ENST00000492764 598 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
DDX56Q9NY93 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 RNU6-143P-201ENST00000516942 93 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 RNA5SP290-201ENST00000517133 127 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 CASP1P1-201ENST00000526345 212 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
DDX56Q9NY93 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 AC068831.4-201ENST00000556118 109 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 AL359212.1-201ENST00000556608 614 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 MIR4443-201ENST00000585052 53 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 AC012507.3-201ENST00000603556 477 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 AC007619.2-201ENST00000605743 379 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 AC012603.1-201ENST00000606424 528 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
DDX56Q9NY93 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
DDX56Q9NY93 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
DDX56Q9NY93 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
DDX56Q9NY93 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
DDX56Q9NY93 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
DDX56Q9NY93 Y_RNA.22-201ENST00000362492 102 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 RNU6-1167P-201ENST00000363227 94 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 Y_RNA.245-201ENST00000364493 95 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
DDX56Q9NY93 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
DDX56Q9NY93 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
DDX56Q9NY93 RNU6-387P-201ENST00000411331 105 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 JKAMPP1-201ENST00000413804 919 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 AL807761.1-201ENST00000417622 171 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.34□□□□□ -1.71
DDX56Q9NY93 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC4.34□□□□□ -1.71
DDX56Q9NY93 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC4.34□□□□□ -1.71
DDX56Q9NY93 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.34□□□□□ -1.71
DDX56Q9NY93 KC877373.1-201ENST00000479066 408 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 AC041039.1-201ENST00000485656 536 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 AC008958.1-201ENST00000511047 682 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 SAP18P1-201ENST00000512058 390 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.34□□□□□ -1.71
DDX56Q9NY93 FAM92A1P1-201ENST00000528023 890 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
DDX56Q9NY93 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
DDX56Q9NY93 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.34□□□□□ -1.71
DDX56Q9NY93 AL139395.1-201ENST00000603662 160 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 AC124864.2-201ENST00000624736 186 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 AC005609.4-201ENST00000625071 447 ntBASIC4.34□□□□□ -1.71
DDX56Q9NY93 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.34□□□□□ -1.71
DDX56Q9NY93 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
DDX56Q9NY93 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
DDX56Q9NY93 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
DDX56Q9NY93 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.34□□□□□ -1.72
DDX56Q9NY93 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.72
DDX56Q9NY93 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
DDX56Q9NY93 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
DDX56Q9NY93 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.33□□□□□ -1.72
DDX56Q9NY93 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
DDX56Q9NY93 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
DDX56Q9NY93 HSPE1P8-201ENST00000406997 288 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
DDX56Q9NY93 AC093106.2-201ENST00000428212 385 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 OR2B8P-201ENST00000432841 938 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.33□□□□□ -1.72
DDX56Q9NY93 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.33□□□□□ -1.72
DDX56Q9NY93 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.33□□□□□ -1.72
DDX56Q9NY93 FABP5P13-201ENST00000452144 328 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.33□□□□□ -1.72
DDX56Q9NY93 AC093899.1-201ENST00000457984 376 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 AC109327.1-201ENST00000471666 403 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 157.1 ms