Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 CKS1BP3-201ENST00000600888 237 ntBASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 AC103710.1-201ENST00000610003 901 ntBASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 SNORD56.5-201ENST00000364281 72 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 MTCO2P8-201ENST00000412213 658 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 Z99755.1-201ENST00000414048 380 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 RPS4XP2-201ENST00000458402 793 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 RNU7-59P-201ENST00000459101 61 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC010468.1-201ENST00000461022 817 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 RPL23AP41-201ENST00000484754 458 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC026801.1-201ENST00000497178 464 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 LTV1P1-201ENST00000510683 1237 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 RNU6-56P-201ENST00000516986 93 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC100870.1-201ENST00000522035 505 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC037471.2-201ENST00000564941 598 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC025281.1-201ENST00000567026 265 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC068135.2-201ENST00000569293 1028 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC060771.1-201ENST00000582031 164 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 TPMTP1-201ENST00000592307 737 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AL157817.1-201ENST00000614264 790 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 AC106754.1-201ENST00000562632 1513 ntBASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.3□□□□□ -1.72
CHMP4AQ9BY43 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 RNVU1-14-201ENST00000384770 164 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC245291.1-201ENST00000419501 328 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC005326.1-201ENST00000429197 123 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AL035407.1-201ENST00000429211 571 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 GAPDHP27-201ENST00000447427 1020 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 RPS15AP27-201ENST00000449183 343 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 RPL23AP35-201ENST00000451906 501 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 RPL37P6-201ENST00000460682 294 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC008481.1-201ENST00000463278 396 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 CENPBD1P1-201ENST00000464061 469 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC008155.2-201ENST00000464337 397 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC091153.1-201ENST00000466297 402 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC126182.1-201ENST00000478134 357 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC021205.2-201ENST00000480069 347 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 POU5F1P7-201ENST00000508759 541 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 MTND5P4-201ENST00000514978 288 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 UBTFL10-201ENST00000528532 562 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 TRAV37-201ENST00000553906 342 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC006504.3-201ENST00000586818 523 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 BNIP3P39-201ENST00000601077 554 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC080013.3-201ENST00000606839 578 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC096577.2-201ENST00000611455 153 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 AC127502.3-201ENST00000636170 1206 ntBASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC4.29□□□□□ -1.72
CHMP4AQ9BY43 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 UBE2FP1-201ENST00000416536 447 ntBASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 USP9YP13-201ENST00000417797 480 ntBASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 AC006960.1-201ENST00000419980 153 ntBASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 USP9YP26-201ENST00000421008 661 ntBASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 ATP5C1P1-201ENST00000441945 895 ntBASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 ELOCP23-201ENST00000452014 332 ntBASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 HMGB1P36-201ENST00000487709 576 ntBASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 AHI1-208ENST00000488690 712 ntTSL 5 BASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 FCF1P3-201ENST00000496394 590 ntBASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 HSPD1P15-201ENST00000505573 1122 ntBASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 AL137843.1-201ENST00000605078 385 ntBASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 AC008498.1-201ENST00000613012 531 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms