Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CENPF-206ENST00000614578 528 ntTSL 5 BASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 AL590099.1-201ENST00000615276 138 ntBASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 ZNF299P-201ENST00000406845 1804 ntBASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
NKX2-3Q8TAU0 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 RNA5SP453-201ENST00000362503 119 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 RNU6-1255P-201ENST00000363434 112 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 Y_RNA.143-201ENST00000363520 106 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 CRP-202ENST00000368110 667 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 SMIM11P1-201ENST00000369586 178 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 SNORA70.6-201ENST00000383934 134 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 SNORA51.8-201ENST00000384234 132 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 Y_RNA.488-201ENST00000384403 102 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 TMEM167AP1-201ENST00000423409 219 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 AL356981.1-201ENST00000454879 684 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 AC018442.3-201ENST00000523025 183 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 AL158827.2-201ENST00000602494 330 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 Y_RNA.772-201ENST00000606692 102 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 AL691447.3-201ENST00000635020 330 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 AL591135.1-201ENST00000401578 5914 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 AC140134.1-201ENST00000511830 3544 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 AC133552.1-201ENST00000569988 4007 ntBASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX2-3Q8TAU0 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 HSPA8P4-201ENST00000511877 1920 ntBASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 U3.3-201ENST00000362986 216 ntBASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 Y_RNA.400-201ENST00000383963 111 ntBASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 AC104073.1-201ENST00000451988 151 ntBASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 FABP5P13-201ENST00000452144 328 ntBASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 TOMM20P2-201ENST00000540082 421 ntBASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 MIR4282-201ENST00000583613 67 ntBASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 RPL7P50-201ENST00000600588 727 ntBASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 AL162431.4-201ENST00000604674 411 ntBASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 AC087783.2-201ENST00000605070 562 ntBASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 AL138820.1-201ENST00000617901 5305 ntBASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
NKX2-3Q8TAU0 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms