Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC131235.4-201ENST00000609288 620 ntBASIC3.6□□□□□ -1.83
NPHP3Q7Z494 U4.3-201ENST00000621047 82 ntBASIC3.6□□□□□ -1.83
NPHP3Q7Z494 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
NPHP3Q7Z494 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 NUP58P1-201ENST00000502546 1738 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.59□□□□□ -1.83
NPHP3Q7Z494 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.83
NPHP3Q7Z494 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
NPHP3Q7Z494 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.59□□□□□ -1.83
NPHP3Q7Z494 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
NPHP3Q7Z494 RNU4-28P-201ENST00000364739 141 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 MIR27B-201ENST00000385129 97 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 RPS24P7-201ENST00000416921 246 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.59□□□□□ -1.83
NPHP3Q7Z494 HMGB1P18-201ENST00000438801 619 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 MTCYBP35-201ENST00000503630 1137 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 AC108210.2-201ENST00000503681 201 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.59□□□□□ -1.83
NPHP3Q7Z494 ATP5F1P5-201ENST00000526403 760 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 OR4P1P-201ENST00000530808 1136 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 AC023538.1-201ENST00000534576 736 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 AC243972.3-201ENST00000539655 198 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 AC126177.3-201ENST00000551839 688 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.59□□□□□ -1.83
NPHP3Q7Z494 AC015712.3-201ENST00000559380 164 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 AC055876.1-202ENST00000567053 138 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.59□□□□□ -1.83
NPHP3Q7Z494 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.59□□□□□ -1.83
NPHP3Q7Z494 AC025588.2-201ENST00000604851 466 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
NPHP3Q7Z494 AC092184.1-201ENST00000625042 715 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 AC116618.1-201ENST00000634617 774 ntBASIC3.59□□□□□ -1.83
NPHP3Q7Z494 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.59□□□□□ -1.83
NPHP3Q7Z494 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
NPHP3Q7Z494 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.59□□□□□ -1.84
NPHP3Q7Z494 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 Y_RNA.25-201ENST00000362528 102 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 RNU6-328P-201ENST00000390887 106 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 RNU6-482P-201ENST00000391068 107 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC016769.3-201ENST00000396562 315 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AP000567.1-201ENST00000406413 156 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 RNA5SP129-201ENST00000410276 118 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 RNU6-712P-201ENST00000410558 100 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 RPLP0P7-201ENST00000416050 667 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC244505.4-201ENST00000434905 287 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 SSXP5-201ENST00000443473 287 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 RPL7P52-201ENST00000449200 742 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 SRIP1-201ENST00000489235 288 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 MTCO2P32-201ENST00000514865 403 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 NBEAP1-201ENST00000554452 979 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC087481.2-201ENST00000565492 330 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC007938.3-201ENST00000604965 623 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC109809.1-201ENST00000619665 545 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AP002782.1-201ENST00000623107 614 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC120349.2-201ENST00000625002 298 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC241585.2-209ENST00000638217 143 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC006927.4-201ENST00000639187 543 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AC244517.1-201ENST00000606030 2086 ntBASIC3.58□□□□□ -1.84
NPHP3Q7Z494 AP001148.1-201ENST00000624124 2359 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 GDI2P1-201ENST00000429312 1336 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
NPHP3Q7Z494 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
NPHP3Q7Z494 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
NPHP3Q7Z494 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
NPHP3Q7Z494 MIR1289-2-201ENST00000408360 111 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC3.57□□□□□ -1.84
NPHP3Q7Z494 AC012498.1-201ENST00000424037 437 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.57□□□□□ -1.84
NPHP3Q7Z494 USP9YP11-201ENST00000427537 717 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 AL356320.1-201ENST00000429616 163 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 AL591806.2-201ENST00000433122 173 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
NPHP3Q7Z494 FAM103A2P-201ENST00000444122 354 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 MTCO2P25-201ENST00000447065 681 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 AC104058.1-201ENST00000448028 297 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.57□□□□□ -1.84
NPHP3Q7Z494 RPL23AP31-201ENST00000456160 467 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.57□□□□□ -1.84
NPHP3Q7Z494 snoU13.4-201ENST00000458916 104 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 RPL21P41-201ENST00000459863 264 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.57□□□□□ -1.84
NPHP3Q7Z494 AC092757.1-201ENST00000467293 467 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 AC021146.8-201ENST00000507455 733 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 KLHL2P1-201ENST00000508691 521 ntBASIC3.57□□□□□ -1.84
NPHP3Q7Z494 AC079395.1-201ENST00000510981 262 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms