Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 KATNBL1P4-201ENST00000503545 918 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 AC008885.2-201ENST00000509506 930 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 SNORA31.24-201ENST00000517232 57 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 NPM1P52-201ENST00000518264 846 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC1.03□□□□□ -2.24
COL7A1Q02388 AL121917.1-203ENST00000605534 577 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 AC009452.1-201ENST00000640823 606 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
COL7A1Q02388 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.03□□□□□ -2.24
COL7A1Q02388 AL118496.1-201ENST00000440201 1812 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 Y_RNA.274-201ENST00000364714 101 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 U3.15-201ENST00000365398 212 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC1.03□□□□□ -2.24
COL7A1Q02388 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC1.03□□□□□ -2.24
COL7A1Q02388 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.03□□□□□ -2.24
COL7A1Q02388 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
COL7A1Q02388 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.03□□□□□ -2.25
COL7A1Q02388 ZNF209P-201ENST00000593450 2304 ntBASIC1.03□□□□□ -2.25
COL7A1Q02388 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.02□□□□□ -2.25
COL7A1Q02388 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.02□□□□□ -2.25
COL7A1Q02388 OR10R1P-201ENST00000441524 1141 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 CALM1P1-201ENST00000442082 433 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 AC092754.2-201ENST00000463506 460 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC1.02□□□□□ -2.25
COL7A1Q02388 AC087373.1-201ENST00000524920 491 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.02□□□□□ -2.25
COL7A1Q02388 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.02□□□□□ -2.25
COL7A1Q02388 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC1.02□□□□□ -2.25
COL7A1Q02388 AC011472.4-201ENST00000615848 491 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.02□□□□□ -2.25
COL7A1Q02388 AP001486.2-201ENST00000561652 5113 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.02□□□□□ -2.25
COL7A1Q02388 AC012321.1-201ENST00000561622 1588 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 EFTUD1P2-201ENST00000514817 1603 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 AC009541.1-201ENST00000438279 2662 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC1.02□□□□□ -2.25
COL7A1Q02388 MIR591-201ENST00000385290 95 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC1.02□□□□□ -2.25
COL7A1Q02388 AC090774.1-201ENST00000435925 246 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 ARL5AP3-201ENST00000439327 386 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 MTCYBP37-201ENST00000510642 1133 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 OR4K8P-201ENST00000578842 1048 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 AC090970.3-201ENST00000612566 866 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 AC010487.4-201ENST00000637027 61 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
COL7A1Q02388 MTCO1P6-201ENST00000481192 1384 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 AP000648.3-201ENST00000623539 4507 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.02□□□□□ -2.25
COL7A1Q02388 SEC63P1-201ENST00000425785 1258 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC1.02□□□□□ -2.25
COL7A1Q02388 AL583843.1-201ENST00000456070 346 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.02□□□□□ -2.25
COL7A1Q02388 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC1.02□□□□□ -2.25
COL7A1Q02388 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC1.02□□□□□ -2.25
COL7A1Q02388 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC1.02□□□□□ -2.25
COL7A1Q02388 AP000907.2-201ENST00000530827 353 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 AC092451.2-201ENST00000538746 658 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 AC007375.1-201ENST00000554513 578 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 AC023813.2-201ENST00000564321 469 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 MTND4LP5-201ENST00000605152 292 ntBASIC1.02□□□□□ -2.25
COL7A1Q02388 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC1.02□□□□□ -2.25
COL7A1Q02388 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.01□□□□□ -2.25
COL7A1Q02388 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.01□□□□□ -2.25
COL7A1Q02388 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
COL7A1Q02388 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.01□□□□□ -2.25
COL7A1Q02388 CYCSP33-201ENST00000414485 327 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 AL358176.2-201ENST00000425769 204 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 WARS2P1-201ENST00000429678 537 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.01□□□□□ -2.25
COL7A1Q02388 RNA5SP436-201ENST00000516020 115 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 RNU1-40P-201ENST00000516816 164 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 RNU1-97P-201ENST00000516872 164 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC1.01□□□□□ -2.25
COL7A1Q02388 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.01□□□□□ -2.25
COL7A1Q02388 DNAJC8P1-201ENST00000554535 372 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 AP001029.3-201ENST00000588063 596 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.01□□□□□ -2.25
COL7A1Q02388 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC1.01□□□□□ -2.25
COL7A1Q02388 AC012493.3-201ENST00000604494 112 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 RPL23AP88-201ENST00000605759 454 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC1.01□□□□□ -2.25
COL7A1Q02388 MIR6078-201ENST00000611069 100 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 AC005156.1-201ENST00000613371 573 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 AC083806.3-201ENST00000614016 455 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 AC007342.9-201ENST00000623877 1385 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 MTND4P1-201ENST00000457501 1466 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
COL7A1Q02388 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC1.01□□□□□ -2.25
COL7A1Q02388 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.01□□□□□ -2.25
COL7A1Q02388 RNA5SP393-201ENST00000363423 117 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 RNU6-716P-201ENST00000365621 103 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.01□□□□□ -2.25
COL7A1Q02388 MTND1P23-201ENST00000416931 372 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 EBAG9P1-201ENST00000418955 543 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 EZH2P1-201ENST00000431167 291 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 TPRKBP1-201ENST00000456243 481 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC1.01□□□□□ -2.25
COL7A1Q02388 MTND4LP22-201ENST00000508209 276 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.01□□□□□ -2.25
COL7A1Q02388 AC090617.7-201ENST00000623952 126 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms