Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
RNF4P78317 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
RNF4P78317 AC063976.2-201ENST00000425667 3556 ntBASIC4.66□□□□□ -1.66
RNF4P78317 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.66□□□□□ -1.66
RNF4P78317 RNA5SP123-201ENST00000363244 119 ntBASIC4.66□□□□□ -1.66
RNF4P78317 Y_RNA.149-201ENST00000363558 117 ntBASIC4.66□□□□□ -1.66
RNF4P78317 RNU6-1059P-201ENST00000363752 98 ntBASIC4.66□□□□□ -1.66
RNF4P78317 Y_RNA.193-201ENST00000363979 102 ntBASIC4.66□□□□□ -1.66
RNF4P78317 RNU6-266P-201ENST00000364225 107 ntBASIC4.66□□□□□ -1.66
RNF4P78317 RNU6-882P-201ENST00000391025 103 ntBASIC4.66□□□□□ -1.66
RNF4P78317 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
RNF4P78317 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.66□□□□□ -1.66
RNF4P78317 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
RNF4P78317 RNU4-6P-201ENST00000410804 122 ntBASIC4.66□□□□□ -1.66
RNF4P78317 HMGB3P2-201ENST00000411913 584 ntBASIC4.66□□□□□ -1.66
RNF4P78317 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.66□□□□□ -1.66
RNF4P78317 USP9YP30-201ENST00000430729 455 ntBASIC4.66□□□□□ -1.66
RNF4P78317 AC108059.2-201ENST00000434626 151 ntBASIC4.66□□□□□ -1.66
RNF4P78317 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.66□□□□□ -1.66
RNF4P78317 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.66□□□□□ -1.66
RNF4P78317 RPL12P3-201ENST00000440080 396 ntBASIC4.66□□□□□ -1.66
RNF4P78317 RPS29P9-201ENST00000440360 171 ntBASIC4.66□□□□□ -1.66
RNF4P78317 AL359672.1-201ENST00000442302 409 ntBASIC4.66□□□□□ -1.66
RNF4P78317 CYCSP34-201ENST00000458172 304 ntBASIC4.66□□□□□ -1.66
RNF4P78317 AC022795.1-201ENST00000473808 480 ntBASIC4.66□□□□□ -1.66
RNF4P78317 RN7SL826P-201ENST00000479724 288 ntBASIC4.66□□□□□ -1.66
RNF4P78317 AC090686.1-201ENST00000481577 749 ntBASIC4.66□□□□□ -1.66
RNF4P78317 AC140172.1-201ENST00000502928 141 ntBASIC4.66□□□□□ -1.66
RNF4P78317 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.66□□□□□ -1.66
RNF4P78317 RNA5SP384-201ENST00000516615 116 ntBASIC4.66□□□□□ -1.66
RNF4P78317 AC087854.1-201ENST00000519706 414 ntBASIC4.66□□□□□ -1.66
RNF4P78317 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.66□□□□□ -1.66
RNF4P78317 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC4.66□□□□□ -1.66
RNF4P78317 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.66□□□□□ -1.66
RNF4P78317 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.66□□□□□ -1.66
RNF4P78317 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC4.66□□□□□ -1.66
RNF4P78317 AL355598.1-201ENST00000604169 202 ntBASIC4.66□□□□□ -1.66
RNF4P78317 AL161423.1-201ENST00000613700 262 ntBASIC4.66□□□□□ -1.66
RNF4P78317 AL713922.2-201ENST00000619384 716 ntBASIC4.66□□□□□ -1.66
RNF4P78317 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.66□□□□□ -1.66
RNF4P78317 BMS1P21-201ENST00000634565 365 ntBASIC4.66□□□□□ -1.66
RNF4P78317 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
RNF4P78317 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
RNF4P78317 AC011755.1-201ENST00000623763 2049 ntBASIC4.66□□□□□ -1.66
RNF4P78317 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.66□□□□□ -1.66
RNF4P78317 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
RNF4P78317 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
RNF4P78317 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.66□□□□□ -1.66
RNF4P78317 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
RNF4P78317 AL731566.1-201ENST00000620490 1937 ntBASIC4.66□□□□□ -1.66
RNF4P78317 INTS6P1-201ENST00000504674 2530 ntBASIC4.66□□□□□ -1.66
RNF4P78317 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
RNF4P78317 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
RNF4P78317 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.65□□□□□ -1.66
RNF4P78317 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.65□□□□□ -1.66
RNF4P78317 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.65□□□□□ -1.66
RNF4P78317 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
RNF4P78317 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
RNF4P78317 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
RNF4P78317 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
RNF4P78317 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
RNF4P78317 SNORD62.1-201ENST00000362541 86 ntBASIC4.65□□□□□ -1.67
RNF4P78317 RN7SKP104-201ENST00000362605 328 ntBASIC4.65□□□□□ -1.67
RNF4P78317 Y_RNA.47-201ENST00000362697 108 ntBASIC4.65□□□□□ -1.67
RNF4P78317 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.65□□□□□ -1.67
RNF4P78317 RNU6-907P-201ENST00000390924 102 ntBASIC4.65□□□□□ -1.67
RNF4P78317 AL109941.1-201ENST00000401925 229 ntBASIC4.65□□□□□ -1.67
RNF4P78317 AL590704.1-201ENST00000402856 794 ntBASIC4.65□□□□□ -1.67
RNF4P78317 RN7SKP125-201ENST00000410481 302 ntBASIC4.65□□□□□ -1.67
RNF4P78317 AC080125.1-201ENST00000414888 684 ntBASIC4.65□□□□□ -1.67
RNF4P78317 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.65□□□□□ -1.67
RNF4P78317 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.65□□□□□ -1.67
RNF4P78317 AL121871.1-201ENST00000443413 436 ntBASIC4.65□□□□□ -1.67
RNF4P78317 HSFY6P-201ENST00000445573 403 ntBASIC4.65□□□□□ -1.67
RNF4P78317 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
RNF4P78317 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.65□□□□□ -1.67
RNF4P78317 RNU6-953P-201ENST00000459154 107 ntBASIC4.65□□□□□ -1.67
RNF4P78317 RN7SL319P-201ENST00000480656 221 ntBASIC4.65□□□□□ -1.67
RNF4P78317 HMGB1P30-201ENST00000492455 606 ntBASIC4.65□□□□□ -1.67
RNF4P78317 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.65□□□□□ -1.67
RNF4P78317 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.65□□□□□ -1.67
RNF4P78317 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC4.65□□□□□ -1.67
RNF4P78317 AC104136.1-201ENST00000512969 394 ntBASIC4.65□□□□□ -1.67
RNF4P78317 RNU6-470P-201ENST00000515954 104 ntBASIC4.65□□□□□ -1.67
RNF4P78317 RN7SKP258-201ENST00000517151 304 ntBASIC4.65□□□□□ -1.67
RNF4P78317 SNORA31.22-201ENST00000517204 135 ntBASIC4.65□□□□□ -1.67
RNF4P78317 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC4.65□□□□□ -1.67
RNF4P78317 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.65□□□□□ -1.67
RNF4P78317 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.65□□□□□ -1.67
RNF4P78317 AC040958.1-201ENST00000561102 201 ntBASIC4.65□□□□□ -1.67
RNF4P78317 BNIP3P5-201ENST00000562290 498 ntBASIC4.65□□□□□ -1.67
RNF4P78317 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.65□□□□□ -1.67
RNF4P78317 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.65□□□□□ -1.67
RNF4P78317 RN7SL652P-201ENST00000577769 300 ntBASIC4.65□□□□□ -1.67
RNF4P78317 MIR4458-201ENST00000578872 75 ntBASIC4.65□□□□□ -1.67
RNF4P78317 MIR4443-201ENST00000585052 53 ntBASIC4.65□□□□□ -1.67
RNF4P78317 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.65□□□□□ -1.67
RNF4P78317 AC011487.3-201ENST00000593607 453 ntBASIC4.65□□□□□ -1.67
RNF4P78317 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.65□□□□□ -1.67
RNF4P78317 MIR15A-201ENST00000607334 83 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms