Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.65□□□□□ -1.83
BDNFP23560 AC011611.1-201ENST00000552179 197 ntBASIC3.65□□□□□ -1.83
BDNFP23560 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
BDNFP23560 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.65□□□□□ -1.83
BDNFP23560 AL133153.1-201ENST00000557756 303 ntBASIC3.65□□□□□ -1.83
BDNFP23560 AC090888.1-201ENST00000561335 1141 ntBASIC3.65□□□□□ -1.83
BDNFP23560 AC006504.3-201ENST00000586818 523 ntBASIC3.65□□□□□ -1.83
BDNFP23560 UBE2L4-201ENST00000587688 464 ntBASIC3.65□□□□□ -1.83
BDNFP23560 AC007179.3-201ENST00000604976 235 ntBASIC3.65□□□□□ -1.83
BDNFP23560 AC019159.1-201ENST00000605094 187 ntBASIC3.65□□□□□ -1.83
BDNFP23560 AC097468.3-201ENST00000607956 456 ntBASIC3.65□□□□□ -1.83
BDNFP23560 AC024933.1-201ENST00000608472 348 ntBASIC3.65□□□□□ -1.83
BDNFP23560 AL158801.5-201ENST00000623123 465 ntBASIC3.65□□□□□ -1.83
BDNFP23560 AL078595.3-201ENST00000623815 1166 ntBASIC3.65□□□□□ -1.83
BDNFP23560 AC097655.1-201ENST00000635075 318 ntBASIC3.65□□□□□ -1.83
BDNFP23560 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.65□□□□□ -1.83
BDNFP23560 AC068647.1-201ENST00000489539 2265 ntBASIC3.65□□□□□ -1.83
BDNFP23560 MTND5P33-201ENST00000571250 1450 ntBASIC3.65□□□□□ -1.83
BDNFP23560 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.65□□□□□ -1.83
BDNFP23560 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.64□□□□□ -1.83
BDNFP23560 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
BDNFP23560 AC092125.1-201ENST00000562568 1995 ntBASIC3.64□□□□□ -1.83
BDNFP23560 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.64□□□□□ -1.83
BDNFP23560 Y_RNA.333-201ENST00000365274 102 ntBASIC3.64□□□□□ -1.83
BDNFP23560 MIR513B-201ENST00000385136 84 ntBASIC3.64□□□□□ -1.83
BDNFP23560 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
BDNFP23560 MIR888-201ENST00000401186 77 ntBASIC3.64□□□□□ -1.83
BDNFP23560 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.64□□□□□ -1.83
BDNFP23560 HMGB1P11-201ENST00000413899 637 ntBASIC3.64□□□□□ -1.83
BDNFP23560 USP9YP26-201ENST00000421008 661 ntBASIC3.64□□□□□ -1.83
BDNFP23560 AL353678.1-201ENST00000422735 741 ntBASIC3.64□□□□□ -1.83
BDNFP23560 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.64□□□□□ -1.83
BDNFP23560 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.64□□□□□ -1.83
BDNFP23560 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.64□□□□□ -1.83
BDNFP23560 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.64□□□□□ -1.83
BDNFP23560 AC108059.3-201ENST00000456388 214 ntBASIC3.64□□□□□ -1.83
BDNFP23560 RPL27AP5-201ENST00000469428 449 ntBASIC3.64□□□□□ -1.83
BDNFP23560 AC091951.3-201ENST00000504093 246 ntBASIC3.64□□□□□ -1.83
BDNFP23560 AC021678.1-201ENST00000505195 936 ntBASIC3.64□□□□□ -1.83
BDNFP23560 AC114786.4-201ENST00000508771 728 ntBASIC3.64□□□□□ -1.83
BDNFP23560 AC114797.1-201ENST00000514003 728 ntBASIC3.64□□□□□ -1.83
BDNFP23560 RNU6-927P-201ENST00000516199 100 ntBASIC3.64□□□□□ -1.83
BDNFP23560 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.64□□□□□ -1.83
BDNFP23560 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.64□□□□□ -1.83
BDNFP23560 AC100870.1-201ENST00000522035 505 ntBASIC3.64□□□□□ -1.83
BDNFP23560 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
BDNFP23560 MTATP6P15-201ENST00000527233 835 ntBASIC3.64□□□□□ -1.83
BDNFP23560 AC067852.3-201ENST00000589177 561 ntBASIC3.64□□□□□ -1.83
BDNFP23560 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
BDNFP23560 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.64□□□□□ -1.83
BDNFP23560 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
BDNFP23560 SNHG22-203ENST00000617833 660 ntBASIC3.64□□□□□ -1.83
BDNFP23560 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
BDNFP23560 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
BDNFP23560 CEP170P1-201ENST00000502249 4587 ntBASIC3.64□□□□□ -1.83
BDNFP23560 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
BDNFP23560 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.64□□□□□ -1.83
BDNFP23560 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
BDNFP23560 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
BDNFP23560 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
BDNFP23560 RPL5P18-201ENST00000406671 891 ntBASIC3.63□□□□□ -1.83
BDNFP23560 AL513477.1-202ENST00000417061 214 ntBASIC3.63□□□□□ -1.83
BDNFP23560 USP9YP13-201ENST00000417797 480 ntBASIC3.63□□□□□ -1.83
BDNFP23560 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.63□□□□□ -1.83
BDNFP23560 AL022400.1-201ENST00000423946 935 ntBASIC3.63□□□□□ -1.83
BDNFP23560 AC091390.3-201ENST00000426478 338 ntBASIC3.63□□□□□ -1.83
BDNFP23560 RPS15AP27-201ENST00000449183 343 ntBASIC3.63□□□□□ -1.83
BDNFP23560 OR6K1P-201ENST00000456766 971 ntBASIC3.63□□□□□ -1.83
BDNFP23560 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.63□□□□□ -1.83
BDNFP23560 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.63□□□□□ -1.83
BDNFP23560 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.63□□□□□ -1.83
BDNFP23560 AL358832.1-201ENST00000497800 389 ntBASIC3.63□□□□□ -1.83
BDNFP23560 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.63□□□□□ -1.83
BDNFP23560 AC118282.1-201ENST00000506408 765 ntBASIC3.63□□□□□ -1.83
BDNFP23560 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.63□□□□□ -1.83
BDNFP23560 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.63□□□□□ -1.83
BDNFP23560 MTND2P32-201ENST00000521584 1038 ntBASIC3.63□□□□□ -1.83
BDNFP23560 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.63□□□□□ -1.83
BDNFP23560 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.63□□□□□ -1.83
BDNFP23560 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.63□□□□□ -1.83
BDNFP23560 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.63□□□□□ -1.83
BDNFP23560 TGIF1P1-201ENST00000558095 802 ntBASIC3.63□□□□□ -1.83
BDNFP23560 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.63□□□□□ -1.83
BDNFP23560 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.63□□□□□ -1.83
BDNFP23560 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.63□□□□□ -1.83
BDNFP23560 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.63□□□□□ -1.83
BDNFP23560 AL355877.2-201ENST00000603670 358 ntBASIC3.63□□□□□ -1.83
BDNFP23560 AC105148.1-201ENST00000604961 409 ntBASIC3.63□□□□□ -1.83
BDNFP23560 AC024560.3-201ENST00000608482 349 ntBASIC3.63□□□□□ -1.83
BDNFP23560 AP000240.1-201ENST00000609910 452 ntBASIC3.63□□□□□ -1.83
BDNFP23560 AC096577.2-201ENST00000611455 153 ntBASIC3.63□□□□□ -1.83
BDNFP23560 AC008498.1-201ENST00000613012 531 ntBASIC3.63□□□□□ -1.83
BDNFP23560 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.63□□□□□ -1.83
BDNFP23560 UCA1.1-201ENST00000620952 75 ntBASIC3.63□□□□□ -1.83
BDNFP23560 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
BDNFP23560 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
BDNFP23560 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
BDNFP23560 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
BDNFP23560 AC026241.1-201ENST00000517873 2142 ntBASIC3.62□□□□□ -1.83
BDNFP23560 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms