Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC6.02□□□□□ -1.45
COL9A1P20849 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL9A1P20849 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL9A1P20849 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL9A1P20849 ST7-212ENST00000422922 1887 ntTSL 5 BASIC6.02□□□□□ -1.45
COL9A1P20849 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL9A1P20849 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL9A1P20849 AC073365.1-203ENST00000641055 1992 ntBASIC6.02□□□□□ -1.45
COL9A1P20849 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL9A1P20849 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL9A1P20849 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.01□□□□□ -1.45
COL9A1P20849 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC6.01□□□□□ -1.45
COL9A1P20849 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
COL9A1P20849 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.01□□□□□ -1.45
COL9A1P20849 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL9A1P20849 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
COL9A1P20849 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
COL9A1P20849 RNA5SP361-201ENST00000362686 118 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 RNU6-525P-201ENST00000363685 104 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 RNU6-512P-201ENST00000364438 103 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 RNU6-275P-201ENST00000364910 107 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 RNU6-376P-201ENST00000384731 106 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 RNU1-77P-201ENST00000390868 162 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 UBA52P6-201ENST00000399822 382 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 AC016739.1-201ENST00000405359 345 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.01□□□□□ -1.45
COL9A1P20849 AL513331.1-201ENST00000411908 397 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 MRPL53P1-201ENST00000414323 319 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 EBAG9P1-201ENST00000418955 543 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 AL512844.2-201ENST00000433990 593 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC6.01□□□□□ -1.45
COL9A1P20849 AC096638.1-201ENST00000444678 216 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 AC009237.7-201ENST00000447357 229 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 AC112187.1-201ENST00000455837 479 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 RNU6ATAC28P-201ENST00000459249 118 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 AP000870.1-201ENST00000472927 406 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC6.01□□□□□ -1.45
COL9A1P20849 AL645944.1-201ENST00000603857 493 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 AC068831.7-201ENST00000616954 363 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC6.01□□□□□ -1.45
COL9A1P20849 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
COL9A1P20849 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL9A1P20849 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL9A1P20849 ZNF204P-201ENST00000416749 2397 ntBASIC6.01□□□□□ -1.45
COL9A1P20849 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL9A1P20849 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL9A1P20849 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
COL9A1P20849 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC6.01□□□□□ -1.45
COL9A1P20849 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.01□□□□□ -1.45
COL9A1P20849 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC6.01□□□□□ -1.45
COL9A1P20849 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC6.01□□□□□ -1.45
COL9A1P20849 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL9A1P20849 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
COL9A1P20849 FAM91A3P-201ENST00000456826 2544 ntBASIC6□□□□□ -1.45
COL9A1P20849 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL9A1P20849 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL9A1P20849 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL9A1P20849 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
COL9A1P20849 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC6□□□□□ -1.45
COL9A1P20849 AL079305.1-201ENST00000623159 3008 ntBASIC6□□□□□ -1.45
COL9A1P20849 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL9A1P20849 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
COL9A1P20849 LCOR-201ENST00000286067 4542 ntBASIC6□□□□□ -1.45
COL9A1P20849 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6□□□□□ -1.45
COL9A1P20849 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL9A1P20849 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL9A1P20849 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
COL9A1P20849 Y_RNA.309-201ENST00000365046 111 ntBASIC6□□□□□ -1.45
COL9A1P20849 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC6□□□□□ -1.45
COL9A1P20849 SNORA51.8-201ENST00000384234 132 ntBASIC6□□□□□ -1.45
COL9A1P20849 RNU6ATAC7P-201ENST00000408111 127 ntBASIC6□□□□□ -1.45
COL9A1P20849 SNORA11.1-201ENST00000408133 129 ntBASIC6□□□□□ -1.45
COL9A1P20849 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC6□□□□□ -1.45
COL9A1P20849 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC6□□□□□ -1.45
COL9A1P20849 GAS5-208ENST00000425771 242 ntTSL 3 BASIC6□□□□□ -1.45
COL9A1P20849 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC6□□□□□ -1.45
COL9A1P20849 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC6□□□□□ -1.45
COL9A1P20849 IFNA11P-201ENST00000446352 526 ntBASIC6□□□□□ -1.45
COL9A1P20849 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC6□□□□□ -1.45
COL9A1P20849 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC6□□□□□ -1.45
COL9A1P20849 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC6□□□□□ -1.45
COL9A1P20849 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC6□□□□□ -1.45
COL9A1P20849 MIR3613-201ENST00000579844 87 ntBASIC6□□□□□ -1.45
COL9A1P20849 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC6□□□□□ -1.45
COL9A1P20849 AC116447.1-201ENST00000613153 453 ntBASIC6□□□□□ -1.45
COL9A1P20849 AC090617.7-201ENST00000623952 126 ntBASIC6□□□□□ -1.45
COL9A1P20849 AL391516.1-201ENST00000554380 2449 ntBASIC6□□□□□ -1.45
COL9A1P20849 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
COL9A1P20849 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL9A1P20849 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6□□□□□ -1.45
COL9A1P20849 AC092692.1-201ENST00000623625 2595 ntBASIC6□□□□□ -1.45
COL9A1P20849 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
COL9A1P20849 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
COL9A1P20849 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC6□□□□□ -1.45
COL9A1P20849 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL9A1P20849 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
COL9A1P20849 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.99□□□□□ -1.45
COL9A1P20849 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC5.99□□□□□ -1.45
COL9A1P20849 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL9A1P20849 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms