Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MTND5P2-201ENST00000442927 1142 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 COX6CP2-201ENST00000444980 225 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
HOXC4P09017 ZNF736P5Y-201ENST00000451173 805 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 NDUFA5P7-201ENST00000452914 242 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 RN7SL75P-201ENST00000461926 281 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 AC010301.1-201ENST00000473936 355 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HOXC4P09017 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC2.77□□□□□ -1.97
HOXC4P09017 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.77□□□□□ -1.97
HOXC4P09017 AC011352.3-201ENST00000505162 593 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 AC104090.1-201ENST00000506341 1171 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 HSPE1P23-201ENST00000509838 286 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 AC048346.1-201ENST00000510247 144 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXC4P09017 COX6CP8-201ENST00000522620 226 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 MTCO1P47-201ENST00000523889 1271 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 AP003461.1-201ENST00000528866 78 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 AP000790.1-201ENST00000528891 737 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 AC135279.1-201ENST00000543493 504 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 HIGD1AP17-201ENST00000554576 276 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 DUXAP1-201ENST00000556632 463 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 AC090888.1-201ENST00000561335 1141 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 AC135628.1-201ENST00000568867 534 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 MIR4666A-201ENST00000580160 79 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 SNORD39.3-201ENST00000584451 71 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXC4P09017 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXC4P09017 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC2.77□□□□□ -1.97
HOXC4P09017 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXC4P09017 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXC4P09017 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXC4P09017 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXC4P09017 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXC4P09017 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXC4P09017 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXC4P09017 DBF4P1-201ENST00000412976 1892 ntBASIC2.77□□□□□ -1.97
HOXC4P09017 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HOXC4P09017 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HOXC4P09017 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
HOXC4P09017 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
HOXC4P09017 SNORD65.1-201ENST00000390889 71 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AL138827.1-201ENST00000402666 306 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 RNA5SP184-201ENST00000411071 108 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 YPEL5P1-201ENST00000419731 367 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AC019097.1-201ENST00000424783 735 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 DUTP6-201ENST00000425573 462 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AC063976.3-201ENST00000426849 329 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 MTCO1P3-201ENST00000429327 192 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXC4P09017 AC236972.1-201ENST00000433225 199 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 ATP5F1P1-201ENST00000433775 569 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXC4P09017 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXC4P09017 RPL17P49-201ENST00000443728 411 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HOXC4P09017 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 RPS20P24-201ENST00000457473 361 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXC4P09017 RPS23P3-201ENST00000470993 430 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HOXC4P09017 DYNLL1P6-201ENST00000503440 264 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 ARL4AP2-201ENST00000507378 601 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AC116353.3-201ENST00000511215 249 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 AC109471.1-201ENST00000511631 612 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 RNA5SP76-201ENST00000516277 87 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 RNU6-759P-201ENST00000516740 103 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXC4P09017 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2.76□□□□□ -1.97
HOXC4P09017 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXC4P09017 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 RPL12P50-201ENST00000603116 116 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC4P09017 AL158042.1-201ENST00000605338 460 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AC009090.3-201ENST00000616553 565 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AC009318.4-201ENST00000620496 486 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 MIR6852-201ENST00000621699 66 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXC4P09017 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HOXC4P09017 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
HOXC4P09017 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
HOXC4P09017 AP000776.1-201ENST00000530032 1663 ntBASIC2.76□□□□□ -1.97
HOXC4P09017 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXC4P09017 AC092593.1-201ENST00000515413 1815 ntBASIC2.75□□□□□ -1.97
HOXC4P09017 AC092435.3-201ENST00000565538 3654 ntBASIC2.75□□□□□ -1.97
HOXC4P09017 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXC4P09017 AC062016.1-201ENST00000355719 319 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 167.2 ms