Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC055855.1-201ENST00000489563 579 ntBASIC2.36□□□□□ -2.03
CCDC88BA6NC98 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC2.36□□□□□ -2.03
CCDC88BA6NC98 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC88BA6NC98 ANP32BP3-201ENST00000559213 706 ntBASIC2.36□□□□□ -2.03
CCDC88BA6NC98 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.36□□□□□ -2.03
CCDC88BA6NC98 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC88BA6NC98 AK6-205ENST00000618980 483 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC88BA6NC98 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC88BA6NC98 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC88BA6NC98 SNORA40.6-201ENST00000391153 128 ntBASIC2.35□□□□□ -2.03
CCDC88BA6NC98 PRELID3BP11-201ENST00000414230 479 ntBASIC2.35□□□□□ -2.03
CCDC88BA6NC98 ELOCP6-201ENST00000429066 328 ntBASIC2.35□□□□□ -2.03
CCDC88BA6NC98 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC88BA6NC98 AL512661.1-201ENST00000434586 1253 ntBASIC2.35□□□□□ -2.03
CCDC88BA6NC98 ELOCP12-201ENST00000458706 328 ntBASIC2.35□□□□□ -2.03
CCDC88BA6NC98 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC88BA6NC98 AC008526.1-201ENST00000509149 338 ntBASIC2.35□□□□□ -2.03
CCDC88BA6NC98 AC136443.5-201ENST00000603741 370 ntBASIC2.35□□□□□ -2.03
CCDC88BA6NC98 AC006023.2-201ENST00000609916 167 ntBASIC2.35□□□□□ -2.03
CCDC88BA6NC98 AC006249.1-201ENST00000621223 471 ntBASIC2.35□□□□□ -2.03
CCDC88BA6NC98 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
CCDC88BA6NC98 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC88BA6NC98 SNORD56.5-201ENST00000364281 72 ntBASIC2.34□□□□□ -2.03
CCDC88BA6NC98 AL030996.1-201ENST00000411430 235 ntBASIC2.34□□□□□ -2.03
CCDC88BA6NC98 AL445183.3-201ENST00000414168 502 ntBASIC2.34□□□□□ -2.03
CCDC88BA6NC98 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC88BA6NC98 Z85994.2-201ENST00000434327 452 ntBASIC2.34□□□□□ -2.03
CCDC88BA6NC98 SNORD59.2-201ENST00000516873 68 ntBASIC2.34□□□□□ -2.03
CCDC88BA6NC98 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC88BA6NC98 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC88BA6NC98 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC88BA6NC98 MIR5194-201ENST00000582634 120 ntBASIC2.34□□□□□ -2.03
CCDC88BA6NC98 BNIP3P4-201ENST00000604946 565 ntBASIC2.34□□□□□ -2.03
CCDC88BA6NC98 AC112503.2-201ENST00000609005 552 ntBASIC2.34□□□□□ -2.03
CCDC88BA6NC98 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
CCDC88BA6NC98 AL136520.1-201ENST00000600311 1322 ntBASIC2.34□□□□□ -2.04
CCDC88BA6NC98 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.33□□□□□ -2.04
CCDC88BA6NC98 RPL30P3-201ENST00000424262 333 ntBASIC2.33□□□□□ -2.04
CCDC88BA6NC98 AL358075.3-201ENST00000426289 226 ntBASIC2.33□□□□□ -2.04
CCDC88BA6NC98 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC88BA6NC98 AF279873.1-201ENST00000523393 313 ntBASIC2.33□□□□□ -2.04
CCDC88BA6NC98 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC88BA6NC98 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.33□□□□□ -2.04
CCDC88BA6NC98 AC121761.2-201ENST00000617300 689 ntBASIC2.33□□□□□ -2.04
CCDC88BA6NC98 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
CCDC88BA6NC98 MIR613-201ENST00000385248 95 ntBASIC2.33□□□□□ -2.04
CCDC88BA6NC98 BX682237.1-201ENST00000415016 335 ntBASIC2.33□□□□□ -2.04
CCDC88BA6NC98 SEM1P1-201ENST00000506694 209 ntBASIC2.33□□□□□ -2.04
CCDC88BA6NC98 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC88BA6NC98 RNA5SP61-201ENST00000516453 100 ntBASIC2.33□□□□□ -2.04
CCDC88BA6NC98 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC88BA6NC98 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC88BA6NC98 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.32□□□□□ -2.04
CCDC88BA6NC98 AP002907.1-201ENST00000606361 1430 ntBASIC2.32□□□□□ -2.04
CCDC88BA6NC98 OR4G11P-202ENST00000642116 1414 ntBASIC2.32□□□□□ -2.04
CCDC88BA6NC98 AP000560.1-201ENST00000624150 1937 ntBASIC2.32□□□□□ -2.04
CCDC88BA6NC98 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.32□□□□□ -2.04
CCDC88BA6NC98 Z96811.1-201ENST00000445880 108 ntBASIC2.32□□□□□ -2.04
CCDC88BA6NC98 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC88BA6NC98 Y_RNA.675-201ENST00000516389 149 ntBASIC2.32□□□□□ -2.04
CCDC88BA6NC98 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC2.32□□□□□ -2.04
CCDC88BA6NC98 AC068714.1-201ENST00000559623 800 ntBASIC2.32□□□□□ -2.04
CCDC88BA6NC98 AC010928.2-201ENST00000588017 287 ntBASIC2.32□□□□□ -2.04
CCDC88BA6NC98 OR4G1P-201ENST00000588632 938 ntBASIC2.32□□□□□ -2.04
CCDC88BA6NC98 MIR6078-201ENST00000611069 100 ntBASIC2.32□□□□□ -2.04
CCDC88BA6NC98 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC2.32□□□□□ -2.04
CCDC88BA6NC98 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC88BA6NC98 AL157700.1-201ENST00000561973 1432 ntBASIC2.31□□□□□ -2.04
CCDC88BA6NC98 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC88BA6NC98 AC002546.1-201ENST00000588041 2504 ntBASIC2.31□□□□□ -2.04
CCDC88BA6NC98 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC88BA6NC98 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC88BA6NC98 SNRPGP13-201ENST00000442212 177 ntBASIC2.31□□□□□ -2.04
CCDC88BA6NC98 RPL17P49-201ENST00000443728 411 ntBASIC2.31□□□□□ -2.04
CCDC88BA6NC98 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC2.31□□□□□ -2.04
CCDC88BA6NC98 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC88BA6NC98 MIR6779-201ENST00000617283 64 ntBASIC2.31□□□□□ -2.04
CCDC88BA6NC98 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC88BA6NC98 MIR3199-2-201ENST00000636243 86 ntBASIC2.31□□□□□ -2.04
CCDC88BA6NC98 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC88BA6NC98 FO393413.1-201ENST00000402892 195 ntBASIC2.3□□□□□ -2.04
CCDC88BA6NC98 UBBP3-201ENST00000445497 241 ntBASIC2.3□□□□□ -2.04
CCDC88BA6NC98 RNU6-711P-201ENST00000517255 106 ntBASIC2.3□□□□□ -2.04
CCDC88BA6NC98 DUXAP4-201ENST00000603046 613 ntBASIC2.3□□□□□ -2.04
CCDC88BA6NC98 AL356118.1-201ENST00000635272 1078 ntBASIC2.3□□□□□ -2.04
CCDC88BA6NC98 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
CCDC88BA6NC98 MOB4-205ENST00000409916 829 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC88BA6NC98 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC88BA6NC98 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC88BA6NC98 RPL21P104-201ENST00000464143 478 ntBASIC2.29□□□□□ -2.04
CCDC88BA6NC98 RPL21P103-201ENST00000479921 488 ntBASIC2.29□□□□□ -2.04
CCDC88BA6NC98 AC008427.1-201ENST00000503102 655 ntBASIC2.29□□□□□ -2.04
CCDC88BA6NC98 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.29□□□□□ -2.04
CCDC88BA6NC98 NOP56P3-201ENST00000549457 385 ntBASIC2.29□□□□□ -2.04
CCDC88BA6NC98 AC068338.1-201ENST00000565567 176 ntBASIC2.29□□□□□ -2.04
CCDC88BA6NC98 AL109653.1-201ENST00000603091 248 ntBASIC2.29□□□□□ -2.04
CCDC88BA6NC98 RNA5SP108-201ENST00000605921 117 ntBASIC2.29□□□□□ -2.04
CCDC88BA6NC98 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.29□□□□□ -2.04
CCDC88BA6NC98 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
CCDC88BA6NC98 RNU1-52P-201ENST00000384190 164 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms