Protein–RNA interactions for Protein: Q9NT62

ATG3, Ubiquitin-like-conjugating enzyme ATG3, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3Q9NT62 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 RNU4-26P-201ENST00000410270 107 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 HMGB3P11-201ENST00000440127 604 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
ATG3Q9NT62 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
ATG3Q9NT62 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 AL445433.1-201ENST00000457507 257 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 RPL30P11-201ENST00000495304 339 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 AC004062.1-201ENST00000509926 645 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 RNU6-764P-201ENST00000516396 105 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 RNA5SP360-201ENST00000516555 118 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 RNA5SP73-201ENST00000516744 108 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 RNU6-1088P-201ENST00000516850 104 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 RNU6-388P-201ENST00000517012 105 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 RNU6-389P-201ENST00000517048 105 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 RANP9-201ENST00000519957 271 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 HMGB1P41-201ENST00000520234 440 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 AP001804.3-201ENST00000525146 880 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 AC091178.1-203ENST00000584586 279 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 AC098848.2-201ENST00000588023 330 ntBASIC5.56□□□□□ -1.52
ATG3Q9NT62 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
ATG3Q9NT62 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
ATG3Q9NT62 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
ATG3Q9NT62 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
ATG3Q9NT62 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
ATG3Q9NT62 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
ATG3Q9NT62 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.56□□□□□ -1.52
ATG3Q9NT62 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 Y_RNA.5-201ENST00000362334 102 ntBASIC5.55□□□□□ -1.52
ATG3Q9NT62 RNU5E-8P-201ENST00000363502 116 ntBASIC5.55□□□□□ -1.52
ATG3Q9NT62 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
ATG3Q9NT62 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
ATG3Q9NT62 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 AC006946.1-201ENST00000429106 328 ntBASIC5.55□□□□□ -1.52
ATG3Q9NT62 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 RPS29P7-201ENST00000439662 171 ntBASIC5.55□□□□□ -1.52
ATG3Q9NT62 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
ATG3Q9NT62 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 AL589765.3-201ENST00000446084 462 ntBASIC5.55□□□□□ -1.52
ATG3Q9NT62 AC079804.1-201ENST00000461922 436 ntBASIC5.55□□□□□ -1.52
ATG3Q9NT62 AC006512.1-201ENST00000468816 291 ntBASIC5.55□□□□□ -1.52
ATG3Q9NT62 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 RNU4-29P-201ENST00000515943 174 ntBASIC5.55□□□□□ -1.52
ATG3Q9NT62 RNU6-864P-201ENST00000516256 108 ntBASIC5.55□□□□□ -1.52
ATG3Q9NT62 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 DYNLL1P4-201ENST00000549314 266 ntBASIC5.55□□□□□ -1.52
ATG3Q9NT62 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 MIR4716-201ENST00000579628 84 ntBASIC5.55□□□□□ -1.52
ATG3Q9NT62 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG3Q9NT62 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG3Q9NT62 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
ATG3Q9NT62 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
ATG3Q9NT62 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
ATG3Q9NT62 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.54□□□□□ -1.52
ATG3Q9NT62 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
ATG3Q9NT62 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
ATG3Q9NT62 RNU1-35P-201ENST00000362782 153 ntBASIC5.54□□□□□ -1.52
ATG3Q9NT62 RNU1-20P-201ENST00000363314 162 ntBASIC5.54□□□□□ -1.52
ATG3Q9NT62 Y_RNA.307-201ENST00000365022 117 ntBASIC5.54□□□□□ -1.52
ATG3Q9NT62 SNORA62.3-201ENST00000365110 153 ntBASIC5.54□□□□□ -1.52
ATG3Q9NT62 AC117470.1-201ENST00000381974 330 ntBASIC5.54□□□□□ -1.52
ATG3Q9NT62 RNU6-38P-201ENST00000384085 107 ntBASIC5.54□□□□□ -1.52
ATG3Q9NT62 Y_RNA.527-201ENST00000384573 102 ntBASIC5.54□□□□□ -1.52
ATG3Q9NT62 MRPL42P3-201ENST00000401492 326 ntBASIC5.54□□□□□ -1.52
ATG3Q9NT62 TPMTP2-201ENST00000414372 726 ntBASIC5.54□□□□□ -1.52
ATG3Q9NT62 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.54□□□□□ -1.52
ATG3Q9NT62 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.54□□□□□ -1.52
ATG3Q9NT62 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.54□□□□□ -1.52
ATG3Q9NT62 AL358232.1-201ENST00000448030 501 ntBASIC5.54□□□□□ -1.52
ATG3Q9NT62 RNU6-333P-201ENST00000459117 107 ntBASIC5.54□□□□□ -1.52
ATG3Q9NT62 RNU7-66P-201ENST00000459469 62 ntBASIC5.54□□□□□ -1.52
ATG3Q9NT62 APOOP2-201ENST00000461561 539 ntBASIC5.54□□□□□ -1.52
ATG3Q9NT62 GMFBP1-201ENST00000467831 427 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms