Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
PCDH9Q9HC56 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.58□□□□□ -1.84
PCDH9Q9HC56 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.58□□□□□ -1.84
PCDH9Q9HC56 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.58□□□□□ -1.84
PCDH9Q9HC56 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PCDH9Q9HC56 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 Y_RNA.41-201ENST00000362646 102 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 Y_RNA.46-201ENST00000362695 102 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 RNU6-1215P-201ENST00000384441 102 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 Y_RNA.548-201ENST00000384656 105 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 RNA5SP56-201ENST00000410277 118 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 RNU2-47P-201ENST00000410649 186 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 RPS3AP3-201ENST00000411933 242 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AC092447.6-201ENST00000414578 210 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AC245052.5-201ENST00000416320 649 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 SPA17P1-201ENST00000416656 452 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 CYCSP4-201ENST00000429682 331 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 USP9YP28-201ENST00000435142 589 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AL353691.1-201ENST00000451332 387 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 SNORA84-201ENST00000459229 133 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AC096751.1-202ENST00000502691 1067 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 TMEM248P1-201ENST00000510579 951 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 RNU6-720P-201ENST00000516363 108 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 SNORA18.6-201ENST00000516792 115 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 RNU6-1003P-201ENST00000517099 105 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AC107934.2-201ENST00000518653 310 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 DUXAP2-201ENST00000519198 589 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AP003385.6-201ENST00000531603 374 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 RPL21P5-201ENST00000554662 472 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AC011468.4-201ENST00000603942 409 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AL136363.2-201ENST00000604173 851 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 NDUFA8P1-201ENST00000605525 367 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 AL590099.1-201ENST00000615276 138 ntBASIC3.57□□□□□ -1.84
PCDH9Q9HC56 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PCDH9Q9HC56 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 MTCO1P24-201ENST00000515438 1558 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AC032011.1-201ENST00000611703 1549 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 RNY4P24-201ENST00000362735 96 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 MIR200C-201ENST00000384980 68 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 RNU6-821P-201ENST00000390995 107 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 RNU6-648P-201ENST00000410190 107 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AC009237.5-201ENST00000414271 501 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 MTCYBP24-201ENST00000420387 1106 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 NEK4P1-201ENST00000433383 879 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 HSPD1P21-201ENST00000436541 245 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 SETP5-201ENST00000437270 562 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 RPL17P49-201ENST00000443728 411 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 MTND1P3-201ENST00000484956 952 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AC138853.1-201ENST00000503549 823 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 RN7SKP13-201ENST00000515933 244 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 SNORA67.7-201ENST00000516664 135 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 EEF1B2P4-201ENST00000551398 348 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 MIR3158-1-201ENST00000583596 81 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AC006254.3-201ENST00000603353 884 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AC108747.1-201ENST00000609508 535 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 MIR7851-201ENST00000610611 160 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AC138749.5-201ENST00000611461 208 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AP001506.1-201ENST00000615444 211 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AC116165.2-201ENST00000616705 206 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AC006133.1-201ENST00000617106 264 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AC010733.2-201ENST00000589496 5702 ntBASIC3.56□□□□□ -1.84
PCDH9Q9HC56 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCDH9Q9HC56 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms