Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-877P-201ENST00000383868 107 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-606P-201ENST00000384721 111 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 RPL21P65-201ENST00000406094 466 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-908P-201ENST00000410160 94 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 RNA5SP107-201ENST00000411358 122 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 JKAMPP1-201ENST00000413804 919 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AC244098.2-201ENST00000422068 99 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 MED13P1-201ENST00000428342 171 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 RPS6P12-201ENST00000432491 726 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 DPPA3P1-201ENST00000448050 469 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AL162151.2-201ENST00000448875 158 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 FDX1P2-201ENST00000450769 375 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AL356010.1-201ENST00000456364 102 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-420P-201ENST00000458780 107 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-261P-201ENST00000459506 102 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 RPS29P25-201ENST00000481709 171 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AC025445.1-201ENST00000502728 300 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 SNORD27.1-201ENST00000516319 72 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 RNU7-51P-201ENST00000516560 62 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-358P-201ENST00000516564 75 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-64P-201ENST00000517119 105 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 IGKV2-38-201ENST00000517443 247 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 OR5BN1P-201ENST00000532955 829 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AC012417.1-201ENST00000582307 1039 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 Z84480.1-201ENST00000605131 311 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 MIR7151-201ENST00000617477 60 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 AC243312.2-201ENST00000623340 601 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 FRG1KP-201ENST00000623592 341 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 ZNF680P1-201ENST00000436625 1469 ntBASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 AL365440.1-201ENST00000436135 2167 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 RLIMP1-201ENST00000339626 1680 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 RNU5E-8P-201ENST00000363502 116 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-1284P-201ENST00000363701 100 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 AL139413.1-201ENST00000421309 217 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 OR2AS1P-201ENST00000427827 319 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 AL358472.1-201ENST00000431295 329 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 RPL23AP30-201ENST00000432419 501 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 AC006480.1-201ENST00000449887 378 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 SNORD97-201ENST00000459187 142 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 RPS27AP1-201ENST00000475545 471 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 RPS15AP36-201ENST00000492022 382 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 RN7SL604P-201ENST00000492589 296 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 RPL29P14-201ENST00000495837 428 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 HSPD1P15-201ENST00000505573 1122 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 VWA8P1-201ENST00000510889 176 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 AC114797.1-201ENST00000514003 728 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 NRON-201ENST00000517270 370 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 AC126177.3-201ENST00000551839 688 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 MIR4293-201ENST00000584305 78 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 NRBF2P5-201ENST00000603087 788 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 AC104662.1-201ENST00000604448 511 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 RNU4-89P-201ENST00000607443 133 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 CKAP2P1-201ENST00000555477 2049 ntBASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PTCHD3Q3KNS1 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.96□□□□□ -1.77
PTCHD3Q3KNS1 AL133412.1-201ENST00000380194 2992 ntBASIC3.96□□□□□ -1.77
PTCHD3Q3KNS1 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
PTCHD3Q3KNS1 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.96□□□□□ -1.77
PTCHD3Q3KNS1 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms