Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.69□□□□□ -1.66
RNF4P78317 AL162373.1-201ENST00000620433 407 ntBASIC4.69□□□□□ -1.66
RNF4P78317 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.69□□□□□ -1.66
RNF4P78317 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
RNF4P78317 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.69□□□□□ -1.66
RNF4P78317 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
RNF4P78317 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
RNF4P78317 AC073136.1-201ENST00000449426 2884 ntBASIC4.69□□□□□ -1.66
RNF4P78317 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.69□□□□□ -1.66
RNF4P78317 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
RNF4P78317 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.69□□□□□ -1.66
RNF4P78317 AL672167.1-205ENST00000641112 3080 ntBASIC4.69□□□□□ -1.66
RNF4P78317 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
RNF4P78317 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
RNF4P78317 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
RNF4P78317 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.68□□□□□ -1.66
RNF4P78317 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
RNF4P78317 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.68□□□□□ -1.66
RNF4P78317 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.68□□□□□ -1.66
RNF4P78317 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
RNF4P78317 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
RNF4P78317 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
RNF4P78317 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.68□□□□□ -1.66
RNF4P78317 AC138393.1-203ENST00000327086 343 ntBASIC4.68□□□□□ -1.66
RNF4P78317 Y_RNA.252-201ENST00000364556 101 ntBASIC4.68□□□□□ -1.66
RNF4P78317 RNA5SP428-201ENST00000365129 132 ntBASIC4.68□□□□□ -1.66
RNF4P78317 Y_RNA.452-201ENST00000384202 108 ntBASIC4.68□□□□□ -1.66
RNF4P78317 Y_RNA.496-201ENST00000384444 101 ntBASIC4.68□□□□□ -1.66
RNF4P78317 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
RNF4P78317 AL645733.1-201ENST00000402250 217 ntBASIC4.68□□□□□ -1.66
RNF4P78317 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.68□□□□□ -1.66
RNF4P78317 RSL24D1P6-201ENST00000426934 401 ntBASIC4.68□□□□□ -1.66
RNF4P78317 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.68□□□□□ -1.66
RNF4P78317 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.68□□□□□ -1.66
RNF4P78317 RHOT1P3-201ENST00000436571 331 ntBASIC4.68□□□□□ -1.66
RNF4P78317 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.68□□□□□ -1.66
RNF4P78317 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC4.68□□□□□ -1.66
RNF4P78317 RN7SL441P-201ENST00000492388 296 ntBASIC4.68□□□□□ -1.66
RNF4P78317 AC026801.1-201ENST00000497178 464 ntBASIC4.68□□□□□ -1.66
RNF4P78317 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.68□□□□□ -1.66
RNF4P78317 RNA5SP43-201ENST00000516559 110 ntBASIC4.68□□□□□ -1.66
RNF4P78317 RNU6-699P-201ENST00000517081 110 ntBASIC4.68□□□□□ -1.66
RNF4P78317 AC026371.1-201ENST00000551867 419 ntBASIC4.68□□□□□ -1.66
RNF4P78317 AC110588.1-201ENST00000559699 137 ntBASIC4.68□□□□□ -1.66
RNF4P78317 NDUFB4P11-201ENST00000560510 395 ntBASIC4.68□□□□□ -1.66
RNF4P78317 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC4.68□□□□□ -1.66
RNF4P78317 MIR3668-201ENST00000582138 75 ntBASIC4.68□□□□□ -1.66
RNF4P78317 AC002044.1-201ENST00000606707 158 ntBASIC4.68□□□□□ -1.66
RNF4P78317 AC091905.4-201ENST00000623432 202 ntBASIC4.68□□□□□ -1.66
RNF4P78317 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.68□□□□□ -1.66
RNF4P78317 AC119674.1-207ENST00000641355 633 ntBASIC4.68□□□□□ -1.66
RNF4P78317 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
RNF4P78317 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
RNF4P78317 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
RNF4P78317 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
RNF4P78317 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
RNF4P78317 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
RNF4P78317 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.68□□□□□ -1.66
RNF4P78317 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.68□□□□□ -1.66
RNF4P78317 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.68□□□□□ -1.66
RNF4P78317 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
RNF4P78317 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
RNF4P78317 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.67□□□□□ -1.66
RNF4P78317 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
RNF4P78317 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.67□□□□□ -1.66
RNF4P78317 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.67□□□□□ -1.66
RNF4P78317 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
RNF4P78317 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.67□□□□□ -1.66
RNF4P78317 RNU6-45P-201ENST00000384471 107 ntBASIC4.67□□□□□ -1.66
RNF4P78317 HSPE1P8-201ENST00000406997 288 ntBASIC4.67□□□□□ -1.66
RNF4P78317 SNORA77-201ENST00000408716 125 ntBASIC4.67□□□□□ -1.66
RNF4P78317 RPL7AP73-201ENST00000413490 353 ntBASIC4.67□□□□□ -1.66
RNF4P78317 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.67□□□□□ -1.66
RNF4P78317 COX5BP7-201ENST00000414780 274 ntBASIC4.67□□□□□ -1.66
RNF4P78317 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.67□□□□□ -1.66
RNF4P78317 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.67□□□□□ -1.66
RNF4P78317 snoU13.20-201ENST00000459180 104 ntBASIC4.67□□□□□ -1.66
RNF4P78317 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.67□□□□□ -1.66
RNF4P78317 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
RNF4P78317 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC4.67□□□□□ -1.66
RNF4P78317 AC009901.1-201ENST00000506703 541 ntBASIC4.67□□□□□ -1.66
RNF4P78317 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
RNF4P78317 AC096745.1-201ENST00000509945 370 ntBASIC4.67□□□□□ -1.66
RNF4P78317 SCARNA16.2-201ENST00000516520 172 ntBASIC4.67□□□□□ -1.66
RNF4P78317 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.67□□□□□ -1.66
RNF4P78317 CYCSP27-201ENST00000527643 293 ntBASIC4.67□□□□□ -1.66
RNF4P78317 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.67□□□□□ -1.66
RNF4P78317 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.67□□□□□ -1.66
RNF4P78317 AC004817.2-201ENST00000561794 651 ntBASIC4.67□□□□□ -1.66
RNF4P78317 RPL23AP87-202ENST00000573039 466 ntBASIC4.67□□□□□ -1.66
RNF4P78317 AC174048.1-201ENST00000603389 144 ntBASIC4.67□□□□□ -1.66
RNF4P78317 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
RNF4P78317 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
RNF4P78317 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.67□□□□□ -1.66
RNF4P78317 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
RNF4P78317 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
RNF4P78317 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.67□□□□□ -1.66
RNF4P78317 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
RNF4P78317 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.66□□□□□ -1.66
RNF4P78317 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms