Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC007967.1-201ENST00000455422 1159 ntBASIC3.41□□□□□ -1.86
MSH3P20585 SNRPFP4-201ENST00000456366 242 ntBASIC3.41□□□□□ -1.86
MSH3P20585 snoU109.4-201ENST00000458953 143 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AC010401.1-201ENST00000463867 348 ntBASIC3.41□□□□□ -1.86
MSH3P20585 RPL23AP67-201ENST00000465341 474 ntBASIC3.41□□□□□ -1.86
MSH3P20585 HMGB1P25-201ENST00000468402 607 ntBASIC3.41□□□□□ -1.86
MSH3P20585 RPS4XP22-201ENST00000480755 780 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AC034222.1-201ENST00000494052 532 ntBASIC3.41□□□□□ -1.86
MSH3P20585 COX7A2P2-201ENST00000505291 250 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.41□□□□□ -1.86
MSH3P20585 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.41□□□□□ -1.86
MSH3P20585 RNU6-1003P-201ENST00000517099 105 ntBASIC3.41□□□□□ -1.86
MSH3P20585 DUXAP2-201ENST00000519198 589 ntBASIC3.41□□□□□ -1.86
MSH3P20585 NDUFB9P3-201ENST00000521269 501 ntBASIC3.41□□□□□ -1.86
MSH3P20585 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.41□□□□□ -1.86
MSH3P20585 AP003033.1-201ENST00000527244 415 ntBASIC3.41□□□□□ -1.86
MSH3P20585 MTCYBP41-201ENST00000528913 1123 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.41□□□□□ -1.86
MSH3P20585 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.41□□□□□ -1.86
MSH3P20585 AC011602.1-201ENST00000546484 331 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.41□□□□□ -1.86
MSH3P20585 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.41□□□□□ -1.86
MSH3P20585 EEF1B2P4-201ENST00000551398 348 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.41□□□□□ -1.86
MSH3P20585 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.41□□□□□ -1.86
MSH3P20585 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.41□□□□□ -1.86
MSH3P20585 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.41□□□□□ -1.86
MSH3P20585 AC079089.3-201ENST00000603094 673 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AC015871.2-201ENST00000603605 948 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AC004853.1-201ENST00000604902 698 ntBASIC3.41□□□□□ -1.86
MSH3P20585 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.41□□□□□ -1.86
MSH3P20585 AL139286.2-201ENST00000606838 396 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AC013562.2-201ENST00000611632 603 ntBASIC3.41□□□□□ -1.86
MSH3P20585 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.41□□□□□ -1.86
MSH3P20585 CR381572.1-201ENST00000625098 102 ntBASIC3.41□□□□□ -1.86
MSH3P20585 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
MSH3P20585 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.41□□□□□ -1.86
MSH3P20585 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.41□□□□□ -1.86
MSH3P20585 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
MSH3P20585 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.4□□□□□ -1.86
MSH3P20585 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.4□□□□□ -1.86
MSH3P20585 AC005183.1-201ENST00000603687 1979 ntBASIC3.4□□□□□ -1.86
MSH3P20585 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
MSH3P20585 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
MSH3P20585 RNU6-853P-201ENST00000364306 107 ntBASIC3.4□□□□□ -1.87
MSH3P20585 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.4□□□□□ -1.87
MSH3P20585 SNORA7.2-201ENST00000364446 145 ntBASIC3.4□□□□□ -1.87
MSH3P20585 RNU6-348P-201ENST00000384386 107 ntBASIC3.4□□□□□ -1.87
MSH3P20585 SNORD17-201ENST00000390930 237 ntBASIC3.4□□□□□ -1.87
MSH3P20585 RNU6-821P-201ENST00000390995 107 ntBASIC3.4□□□□□ -1.87
MSH3P20585 AL356421.1-201ENST00000403255 413 ntBASIC3.4□□□□□ -1.87
MSH3P20585 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.4□□□□□ -1.87
MSH3P20585 AIMP1P1-201ENST00000418670 937 ntBASIC3.4□□□□□ -1.87
MSH3P20585 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.4□□□□□ -1.87
MSH3P20585 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.4□□□□□ -1.87
MSH3P20585 USP9YP14-201ENST00000430663 563 ntBASIC3.4□□□□□ -1.87
MSH3P20585 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.4□□□□□ -1.87
MSH3P20585 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
MSH3P20585 AL590365.1-201ENST00000450788 243 ntBASIC3.4□□□□□ -1.87
MSH3P20585 SNORD42A-201ENST00000459584 64 ntBASIC3.4□□□□□ -1.87
MSH3P20585 RN7SL293P-201ENST00000481765 281 ntBASIC3.4□□□□□ -1.87
MSH3P20585 RPL31P13-201ENST00000484151 370 ntBASIC3.4□□□□□ -1.87
MSH3P20585 AC112204.1-201ENST00000502591 103 ntBASIC3.4□□□□□ -1.87
MSH3P20585 AC022878.1-201ENST00000530684 149 ntBASIC3.4□□□□□ -1.87
MSH3P20585 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC3.4□□□□□ -1.87
MSH3P20585 AC005951.1-201ENST00000576706 485 ntBASIC3.4□□□□□ -1.87
MSH3P20585 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.4□□□□□ -1.87
MSH3P20585 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.4□□□□□ -1.87
MSH3P20585 AC087683.1-201ENST00000591187 441 ntBASIC3.4□□□□□ -1.87
MSH3P20585 TPMTP1-201ENST00000592307 737 ntBASIC3.4□□□□□ -1.87
MSH3P20585 AC078795.2-201ENST00000602835 1252 ntBASIC3.4□□□□□ -1.87
MSH3P20585 AC112191.3-201ENST00000604371 277 ntBASIC3.4□□□□□ -1.87
MSH3P20585 AC138749.5-201ENST00000611461 208 ntBASIC3.4□□□□□ -1.87
MSH3P20585 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.4□□□□□ -1.87
MSH3P20585 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.4□□□□□ -1.87
MSH3P20585 AC116165.2-201ENST00000616705 206 ntBASIC3.4□□□□□ -1.87
MSH3P20585 AL590240.3-201ENST00000621416 943 ntBASIC3.4□□□□□ -1.87
MSH3P20585 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.4□□□□□ -1.87
MSH3P20585 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
MSH3P20585 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
MSH3P20585 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
MSH3P20585 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.4□□□□□ -1.87
MSH3P20585 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
MSH3P20585 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
MSH3P20585 MTCO1P12-201ENST00000414273 1543 ntBASIC3.39□□□□□ -1.87
MSH3P20585 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.39□□□□□ -1.87
MSH3P20585 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.39□□□□□ -1.87
MSH3P20585 RNU1-75P-201ENST00000347264 129 ntBASIC3.39□□□□□ -1.87
MSH3P20585 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
MSH3P20585 RNU6-359P-201ENST00000365466 108 ntBASIC3.39□□□□□ -1.87
MSH3P20585 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
MSH3P20585 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.39□□□□□ -1.87
MSH3P20585 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.39□□□□□ -1.87
MSH3P20585 RNU6-1207P-201ENST00000384343 107 ntBASIC3.39□□□□□ -1.87
MSH3P20585 RNU6-297P-201ENST00000384636 107 ntBASIC3.39□□□□□ -1.87
MSH3P20585 MIR607-201ENST00000385241 96 ntBASIC3.39□□□□□ -1.87
MSH3P20585 RNU6-837P-201ENST00000391056 108 ntBASIC3.39□□□□□ -1.87
MSH3P20585 SNORD115.1-201ENST00000391109 76 ntBASIC3.39□□□□□ -1.87
MSH3P20585 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC3.39□□□□□ -1.87
MSH3P20585 AL583834.1-201ENST00000406943 343 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms