Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AL606489.2-201ENST00000433886 234 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.4□□□□□ -1.71
HLA-DOAP06340 PRSS3P4-201ENST00000453323 162 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 SNORD105B-201ENST00000458770 79 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 RPS20P20-201ENST00000460498 340 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 AC110768.1-201ENST00000509222 400 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.4□□□□□ -1.71
HLA-DOAP06340 AP003034.1-201ENST00000534621 422 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 AC092470.1-201ENST00000546187 132 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 AC069240.1-201ENST00000548774 375 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 AC099489.2-201ENST00000574976 260 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 YWHAQP7-201ENST00000603536 658 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 AC025449.1-201ENST00000603896 529 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.4□□□□□ -1.71
HLA-DOAP06340 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.4□□□□□ -1.71
HLA-DOAP06340 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 AC015967.1-201ENST00000619893 476 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 AC009318.4-201ENST00000620496 486 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 AL136221.1-201ENST00000621449 509 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 YWHAEP7-203ENST00000622054 312 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 AC005858.4-201ENST00000623191 700 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 AC119674.1-207ENST00000641355 633 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 ZNF680P1-201ENST00000436625 1469 ntBASIC4.4□□□□□ -1.71
HLA-DOAP06340 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.71
HLA-DOAP06340 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
HLA-DOAP06340 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HLA-DOAP06340 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HLA-DOAP06340 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
HLA-DOAP06340 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
HLA-DOAP06340 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HLA-DOAP06340 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.4□□□□□ -1.71
HLA-DOAP06340 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HLA-DOAP06340 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 AC009229.4-201ENST00000623854 1947 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
HLA-DOAP06340 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 SNORD82-201ENST00000365530 70 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 RNU1-39P-201ENST00000383897 165 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 RNU6-146P-201ENST00000384602 108 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 Y_RNA.548-201ENST00000384656 105 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 MIR218-2-201ENST00000385006 110 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 HLFP1-201ENST00000402375 499 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 MRPL42P2-201ENST00000403169 426 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 RNU2-9P-201ENST00000410194 145 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 RNU6-1068P-201ENST00000410958 103 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 EEF1A1P40-201ENST00000412883 573 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 RPS15AP40-201ENST00000419621 391 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 AL590609.2-201ENST00000421430 368 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 MTCO2P5-201ENST00000422621 426 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 OR51AB1P-201ENST00000429046 620 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 USP9YP15-201ENST00000442391 422 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 AP000942.1-201ENST00000463969 747 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 RPL36AP51-201ENST00000487216 318 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 AC079382.1-201ENST00000493346 557 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 RNU6-835P-201ENST00000516974 104 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 OR5AL2P-201ENST00000532185 920 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 HPRT1P3-201ENST00000539521 576 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 ARL2BPP2-201ENST00000550907 489 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 MIR4795-201ENST00000584182 89 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 AC010591.1-201ENST00000603941 649 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 Z84480.1-201ENST00000605131 311 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 AC007038.2-201ENST00000608095 740 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 AL356585.4-201ENST00000623078 1229 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 AC079597.1-201ENST00000624306 508 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 AP000553.6-201ENST00000641242 118 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HLA-DOAP06340 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HLA-DOAP06340 AL118496.1-201ENST00000440201 1812 ntBASIC4.39□□□□□ -1.71
HLA-DOAP06340 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
HLA-DOAP06340 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HLA-DOAP06340 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HLA-DOAP06340 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.38□□□□□ -1.71
HLA-DOAP06340 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HLA-DOAP06340 Y_RNA.142-201ENST00000363491 102 ntBASIC4.38□□□□□ -1.71
HLA-DOAP06340 RNY4P16-201ENST00000364768 94 ntBASIC4.38□□□□□ -1.71
HLA-DOAP06340 MT-TD-201ENST00000387419 68 ntBASIC4.38□□□□□ -1.71
HLA-DOAP06340 RPS4XP8-201ENST00000402039 771 ntBASIC4.38□□□□□ -1.71
HLA-DOAP06340 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.38□□□□□ -1.71
HLA-DOAP06340 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.38□□□□□ -1.71
HLA-DOAP06340 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.38□□□□□ -1.71
HLA-DOAP06340 MTATP6P18-201ENST00000417994 673 ntBASIC4.38□□□□□ -1.71
HLA-DOAP06340 AC068533.1-201ENST00000418542 415 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms